View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_123 (Length: 202)
Name: NF3376_low_123
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_123 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 41161495 - 41161356
Alignment:
| Q |
48 |
ctagcttgcgcttctgtatattttgatagtacaaacacaacaacgattacagtgaaaactgatcaagatacaacgtttacatatactgatgaaagagtaa |
147 |
Q |
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| T |
41161495 |
ctagcttgcgcttctgtatattttgatagtacaaacacaacaacgattacagtgaaaactgatcaagatacaacgtttacatatactgatgaatgagtaa |
41161396 |
T |
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| Q |
148 |
tgtaacaagcatcatcaaaattgacaaaatgtgcagttac |
187 |
Q |
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| T |
41161395 |
tgtaacaagcatcatcaaaattgacataatgtgcagttac |
41161356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 41150198 - 41150256
Alignment:
| Q |
94 |
ttacagtgaaaactgatcaagatacaacgtttacatatactgatgaaagagtaatgtaa |
152 |
Q |
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| T |
41150198 |
ttacagtgaaagctgatcaagatgtaacatttacatatactgatgaatgagtaatgtaa |
41150256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 3734345 - 3734436
Alignment:
| Q |
62 |
tgtatattttgatagtacaaacacaacaacga-ttacagtgaaaactgatcaagatacaacgtttacatatactgatgaaagagtaatgtaa |
152 |
Q |
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| T |
3734345 |
tgtatatattgatggtacaaacagaacaacaacttacagtgaaagctaatcaagatataacatttacatatactgatgaatgagtaatgtaa |
3734436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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