View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_13 (Length: 511)
Name: NF3376_low_13
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 45004144 - 45003820
Alignment:
| Q |
17 |
agaagactggttctggttagcggtagaggatgaacggattactgtggttgaagttcttgaattttgctttgcaattttgaaattgaaaagtgggaaattg |
116 |
Q |
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| T |
45004144 |
agaagactggttctggttagcggtagaggatgaacggattactgtggttgaagttcttgaattttgctttgcaattttgaaattgaaaagtgggaaattg |
45004045 |
T |
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| Q |
117 |
agattgtgttgtttttgttggatattcaaattcagtttcgttggtattgaacaaattggagttagagtcgccattgatggagcttccggagttatggtgc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45004044 |
agattgtgttgtttttgttggatattcaaattcagtttcgttggtattgaacaaattggagttagagtcgccattgatggagcttcctgagttatggtgc |
45003945 |
T |
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| Q |
217 |
gtaacgagcaccgcgaattataagatacnnnnnnnnnnnnnngagtccttgctttgggctttgggttatctatttacttgtttgggctggcccggttatt |
316 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45003944 |
gtaacgagcaccgcgaattataagatacttttttttttttttgagtccttgctttgggctttgggttatctatttacttgtttgggctggcccggttatt |
45003845 |
T |
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| Q |
317 |
ggttcattgcatgatgattgctcag |
341 |
Q |
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| T |
45003844 |
ggttcattgcatgatgattgctcag |
45003820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 341 - 502
Target Start/End: Complemental strand, 45003741 - 45003580
Alignment:
| Q |
341 |
gattgagagttacgatccaatacagacaaaaacagctaattgagagttacgatctaatcgaagcgaaaatgaagtgcatattgagaaaatttctcatcgc |
440 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45003741 |
gattgagagttacaatccaatacagacaaaaacagctaattgagagttacgatctaatcgaagcgaaaatgaagtgcatattgagaaactttctcatcgc |
45003642 |
T |
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| Q |
441 |
atagtttgtcatttgcatattttcactcttattatcaagaaattaggatcatcattctgtgc |
502 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45003641 |
atagtttgtcatttgcatattttcactcttattagcaagaaattaggatcatcattctgtgc |
45003580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 14392243 - 14392446
Alignment:
| Q |
17 |
agaagactggttctggttagcggtagaggatgaacggattactgtggttgaagttcttgaattttgctttgcaattttgaaattgaaaagtgggaaattg |
116 |
Q |
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||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||| |
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| T |
14392243 |
agaagactggttctggttagcggtaaaggacaagtggattattgtggttgaagttcttgaattttgctttggattttttaaattgaaaagtgcaaaattg |
14392342 |
T |
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| Q |
117 |
agattgtgttgtttttgttggatattcaaattcagtttcgttggtattgaacaaattggagttagagtcgccattgatggagcttccggagttatggtgc |
216 |
Q |
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| |||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |
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| T |
14392343 |
aaattgtgttgtttttgttggatactcaaattcagttccgctggtattgaacaaattggagttagagtcgccattgacagagcttacagagttatggtgc |
14392442 |
T |
|
| Q |
217 |
gtaa |
220 |
Q |
| |
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|||| |
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| T |
14392443 |
gtaa |
14392446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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