View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_14 (Length: 500)
Name: NF3376_low_14
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 4586512 - 4586992
Alignment:
| Q |
1 |
tctttcattgatttactaatcattctatcgttattattcctatttttcatgataataagattatttcatgctagattcctcgcactgttattatttttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4586512 |
tctttcattgatttactaatcattctatcgttattattcctatttttcatgataataagattatttcatgctagattcctcgcactgttattatttttaa |
4586611 |
T |
|
| Q |
101 |
agatcaaaattgaagatgcatagaatttagggatctgcagtgaaccatttatactttcttctgccaactacctcaaactatatttagtgttttcgttaag |
200 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4586612 |
agatcataattgaagatgcatagaatttagggatctgcagtgaactatttatactttcttctgctaactacctcaaactatatttagtgttttcgttaag |
4586711 |
T |
|
| Q |
201 |
tagtgttaatgttaactgtgagatcaattatgttgctatagcttcaactgaagtatcaaatctcgatgtagtcgtgtacttttgtaaagattcattaact |
300 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||||||||| |
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| T |
4586712 |
tagtgttaatgttaactgcgagatcaattaagttgctatagcttcaaccgaagtatcaaatcttgatgtagtcgtgtatttttgtaaatattcattaact |
4586811 |
T |
|
| Q |
301 |
tgaaatgtcgtttcacgtccgtaacgcttccaaattttgatcaaatgccctactattcttacatatttgaagaaatatccattaatcacttaccaaatta |
400 |
Q |
| |
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||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4586812 |
tgaaacg-----tcacgtctgtaacgtttccaaattttgatcaaatgccctactattcttacatatttgaagaaatatccattaatcacttaccaaatta |
4586906 |
T |
|
| Q |
401 |
agtagcggttcaacactcaatgcccaagctagtgaaagcatcatgtgtgaagtgtgacatgtccgattcttttttgtattttcctc |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4586907 |
agtagcggttcaacactcaatgcccaagctagtgaaagcatcatgtgtgaagtgtgacatgtccgattcttttttgtattttcctc |
4586992 |
T |
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