View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_15 (Length: 496)
Name: NF3376_low_15
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 10 - 496
Target Start/End: Original strand, 4030744 - 4031230
Alignment:
| Q |
10 |
gaagcaaagggaaatagtatgaatacaattatagtggggtccaggtcaatttaaaagatattgtgaagcttgttgagacacattgcttcatattaaagaa |
109 |
Q |
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| T |
4030744 |
gaagcaaagggaaatagtatgaatacaattatagtggggtccaggtcaatttaaaagatattgtgaagcttgttgagacacattgcttcatattaaagaa |
4030843 |
T |
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| Q |
110 |
agtatagtctataataagatgaaataaaacatgaaacagaaagcatcatttttcagtaagaaactcggatttttgtctgaactgaaaatccaagagtact |
209 |
Q |
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| T |
4030844 |
agtatagtctataataagatgaaataaaacatgaaacagaaagcatcatttttcagtaagaaactcggatttttgtctgaactgaaaatccaagagtact |
4030943 |
T |
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| Q |
210 |
caagaatctttgcaaggaagaaaacaaagattaaaaactcaaactgttgtgactttattaatgcattcattttgcatctaaaaccattttctataattag |
309 |
Q |
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| T |
4030944 |
caagaatctttgcaaggaagaaaacaaagattaaaaactcaaactgttgtgactttattaatgcattcattttgcatctaaaaccattttctataattag |
4031043 |
T |
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| Q |
310 |
aacaaaagtttgtacaagtcacaataaaactacggtatctgtccccactcttgattaaatggacaaggttttaaggaaaatgataaatatagcgaaggaa |
409 |
Q |
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| T |
4031044 |
aacaaaagtttgtacaattcacaataaaactacggtatctgtccccactcttgattaaatggacaaggttttaaggaaaatgataaatatagcgaaggaa |
4031143 |
T |
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| Q |
410 |
acaatcatgaagcaattgcgaataagtgttattggttgccaatccccaccactgggtgatttcagcaaattccaggactgaagtgat |
496 |
Q |
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| T |
4031144 |
acaatcatgaagcaattgcaaataagtgttattggttgccaatccccacgactgggtgatttcagcaaattccaggactgaagtgat |
4031230 |
T |
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