View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_low_16 (Length: 495)

Name: NF3376_low_16
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_low_16
NF3376_low_16
[»] chr6 (8 HSPs)
chr6 (44-285)||(32450275-32450513)
chr6 (75-284)||(23260617-23260828)
chr6 (86-283)||(34636188-34636387)
chr6 (44-287)||(25005141-25005382)
chr6 (185-283)||(26182602-26182700)
chr6 (147-283)||(24992418-24992551)
chr6 (75-113)||(10751599-10751637)
chr6 (181-284)||(13777247-13777349)
[»] chr1 (6 HSPs)
chr1 (44-284)||(35762062-35762302)
chr1 (82-282)||(9537402-9537602)
chr1 (150-284)||(37667265-37667399)
chr1 (77-285)||(16074709-16074910)
chr1 (75-129)||(37667217-37667271)
chr1 (210-284)||(338060-338134)
[»] chr3 (6 HSPs)
chr3 (75-285)||(5004759-5004971)
chr3 (86-284)||(46404612-46404813)
chr3 (90-254)||(16975285-16975450)
chr3 (76-284)||(11967931-11968129)
chr3 (182-287)||(16475275-16475381)
chr3 (16-46)||(16975588-16975618)
[»] scaffold0413 (1 HSPs)
scaffold0413 (44-284)||(8840-9079)
[»] chr7 (8 HSPs)
chr7 (86-283)||(15873987-15874186)
chr7 (76-274)||(21491537-21491737)
chr7 (76-284)||(22077633-22077841)
chr7 (76-286)||(48576330-48576540)
chr7 (125-284)||(18367412-18367576)
chr7 (144-284)||(48654339-48654478)
chr7 (149-286)||(9993289-9993427)
chr7 (244-284)||(12911912-12911952)
[»] chr8 (3 HSPs)
chr8 (275-478)||(3190166-3190356)
chr8 (275-373)||(22636468-22636566)
chr8 (198-282)||(40841568-40841652)
[»] chr5 (3 HSPs)
chr5 (125-283)||(536731-536891)
chr5 (76-284)||(4558012-4558222)
chr5 (86-204)||(536895-537014)
[»] chr4 (6 HSPs)
chr4 (76-285)||(28969223-28969432)
chr4 (76-252)||(49499045-49499221)
chr4 (275-471)||(13652470-13652670)
chr4 (275-471)||(13660595-13660795)
chr4 (199-285)||(41868569-41868655)
chr4 (181-284)||(69251-69352)
[»] chr2 (8 HSPs)
chr2 (137-284)||(32735394-32735542)
chr2 (263-471)||(17851930-17852140)
chr2 (181-286)||(28267692-28267795)
chr2 (181-285)||(12774954-12775057)
chr2 (140-284)||(1193599-1193743)
chr2 (210-284)||(40447433-40447507)
chr2 (250-284)||(41340858-41340892)
chr2 (127-266)||(29270654-29270792)
[»] scaffold1838 (1 HSPs)
scaffold1838 (76-240)||(221-384)
[»] scaffold0120 (1 HSPs)
scaffold0120 (210-285)||(2645-2721)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 44 - 285
Target Start/End: Original strand, 32450275 - 32450513
Alignment:
Q  44 caataccacaaaa-catatatgcatagaaattaaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-cta 141  Q
    ||||||||||||| ||||||||||||||||     |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||    
T  32450275 caataccacaaaaacatatatgcatagaaa-----aataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaacta 32450369  T
Q  142 ataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacata 241  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  32450370 ataacttttataaaaagttaaaatttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacaca 32450469  T
Q  242 atcctagtacttagtatgggcgtatgggaaaaagcccttacctt 285  Q
    |||||||||||||||| |  |||| ||| |||||||||||||||    
T  32450470 atcctagtacttagtaagaacgtacggggaaaagcccttacctt 32450513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 75 - 284
Target Start/End: Original strand, 23260617 - 23260828
Alignment:
Q  75 aaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccata 173  Q
    ||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  23260617 aaaaataaaataaatgtcattccacataacattatcatacaaacatcatataaaatataattaaactaataacttttataaaaggctaaattttaccata 23260716  T
Q  174 tgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtat-gggaaa 272  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||| |  ||||| ||||||    
T  23260717 tgaattcatattttagttgttttgttcttttcaagagacaagaatctctacctctaattcataacataatcctaatacttagtaagaacgtatggggaaa 23260816  T
Q  273 aagcccttacct 284  Q
    ||||||||||||    
T  23260817 aagcccttacct 23260828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 86 - 283
Target Start/End: Complemental strand, 34636387 - 34636188
Alignment:
Q  86 aaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatat 184  Q
    ||||||||| |||||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34636387 aaatgtcatgccacataacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 34636288  T
Q  185 tttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtat-gggaaaaagcccttacc 283  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||||||||||    
T  34636287 tttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 34636188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 44 - 287
Target Start/End: Complemental strand, 25005382 - 25005141
Alignment:
Q  44 caataccacaaaa-catatatgcatagaaattaaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataatt-aacta 141  Q
    ||||||||||||| |||||||| ||||     ||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||| |||||    
T  25005382 caataccacaaaaacatatatgaatag-----aaaaataaaataaatgtcattccacataaaattatcatacagacatcatataaaatataattaaacta 25005288  T
Q  142 ataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacata 241  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25005287 ataacttttataaaaggttaaattttaccatatgaattcttattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacata 25005188  T
Q  242 atcctagtacttagtatgggcgtat-gggaaaaagcccttaccttaa 287  Q
    ||| |||||||||||| |  ||||| |||||||| | ||||||||||    
T  25005187 atcttagtacttagtaagaacgtatggggaaaaaactcttaccttaa 25005141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 283
Target Start/End: Original strand, 26182602 - 26182700
Alignment:
Q  185 tttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtat-gggaaaaagcccttacc 283  Q
    |||||||||||| ||||| |||||  ||||||||||||| |||||||||||||||| |||||| |||||||||||| | ||| |||||||||||||||||    
T  26182602 tttagttgtttt-ttcttctcaacatacaagaatctctaactctaattcataacatcatcctaatacttagtatggacatatggggaaaaagcccttacc 26182700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 283
Target Start/End: Complemental strand, 24992551 - 24992418
Alignment:
Q  147 ttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcct 246  Q
    |||||||||||  ||||||||||||  | ||   |||||||| |||||||  |||||||||   |||||||| ||||| | ||||||||||||||  |||    
T  24992551 ttttataaaagaataaattttaccacgtaaagaaatattttaattgtttt--tcttttcaaaa-acaagaatttctacttataattcataacatatccct 24992455  T
Q  247 agtacttagtatgggcgtatgggaaaaagcccttacc 283  Q
    |||||||| ||| | | ||||||||||||||||||||    
T  24992454 agtacttaatatagacatatgggaaaaagcccttacc 24992418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 10751599 - 10751637
Alignment:
Q  75 aaaaataaaataaatgtcattccacattacattatcata 113  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  10751599 aaaaataaaataaatgtcattccacataacattatcata 10751637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 13777247 - 13777349
Alignment:
Q  181 atattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgta-tgggaaaaagccct 279  Q
    |||||||||||||||  |||||| |||  || |||||| | ||| ||||||||| ||||| ||||||||| ||| ||||| ||||  ||||||||| |||    
T  13777247 atattttagttgttt--ttctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtatttattatggacgtacggggaaaaagtcct 13777344  T
Q  280 tacct 284  Q
    |||||    
T  13777345 tacct 13777349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 44 - 284
Target Start/End: Original strand, 35762062 - 35762302
Alignment:
Q  44 caataccacaaaa-catatatgcatagaaattaaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-cta 141  Q
    ||||||||||||| ||||||||||||||||     |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||    
T  35762062 caataccacaaaaacatatatgcatagaaa-----aataaaataaatgtcattccacataacattatcatacacacatcatataaaatatagttaaacta 35762156  T
Q  142 ataactttt--ataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataaca 239  Q
    |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  35762157 ataacttttttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataaca 35762256  T
Q  240 taatcctagtacttagtatgggcgtat-gggaaaaagcccttacct 284  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  35762257 taatcctagtacttagtatggacgtatggggaaaaagcccttacct 35762302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 82 - 282
Target Start/End: Original strand, 9537402 - 9537602
Alignment:
Q  82 aaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattc 180  Q
    ||||||||||||||| |||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||     
T  9537402 aaataaatgtcattctacataacattatcatacaaacatcatataaaatataattaaactaataacttttataaaaggttaaattttacaatataaattt 9537501  T
Q  181 atattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatg-ggaaaaagccct 279  Q
    |||||||| |||||||  |||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||||| || |||||||||    
T  9537502 atattttacttgtttt--tcttctcaacagacaagaatctatacctctaattcataacatcatcctagtactcagtatggacgtatgaggtaaaagccct 9537599  T
Q  280 tac 282  Q
    |||    
T  9537600 tac 9537602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 150 - 284
Target Start/End: Original strand, 37667265 - 37667399
Alignment:
Q  150 tataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagt 249  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  37667265 tataaaaggttaaattttatcatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctatt 37667364  T
Q  250 acttagtatgggcgtatgggaaaaagcccttacct 284  Q
    |||||||| |  |||||||| ||||  ||||||||    
T  37667365 acttagtaagaacgtatggggaaaaagccttacct 37667399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 77 - 285
Target Start/End: Complemental strand, 16074910 - 16074709
Alignment:
Q  77 aaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa--ctaataacttttataaaaggttaaattttaccatat 174  Q
    |||||||||||||||||||| ||||||||||||||           ||||||||||||||||  ||||||||||||||||||| |||||||||| |||||    
T  16074910 aaataaaataaatgtcattctacattacattatca-----------tataaaatataattaaatctaataacttttataaaagattaaattttaacatat 16074822  T
Q  175 gaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataa---cataatcctagtacttagtatgggcgtatggg-a 270  Q
    |||||||||||||| ||||||  ||||||| ||||||||| |||||||| |||||||||||||   ||| |||| |||||||||||||  |||||||| |    
T  16074821 gaattcatattttaattgttt--ttctttttaacggacaaaaatctctatctctaattcataatatcatcatcccagtacttagtatgaacgtatgggaa 16074724  T
Q  271 aaaagcccttacctt 285  Q
    |||||||||||||||    
T  16074723 aaaagcccttacctt 16074709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 37667217 - 37667271
Alignment:
Q  75 aaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaa 129  Q
    |||||||||||||| |||||||||||| ||||||||||| | |||||||||||||    
T  37667217 aaaaataaaataaaagtcattccacataacattatcatacagacatcatataaaa 37667271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 338134 - 338060
Alignment:
Q  210 gacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatggg-aaaaagcccttacct 284  Q
    |||||||||  ||||||||| || |||||||| || ||| ||||||||||| |||||||| |||||||||||||||    
T  338134 gacaagaattactacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacct 338060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 75 - 285
Target Start/End: Original strand, 5004759 - 5004971
Alignment:
Q  75 aaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccata 173  Q
    ||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  5004759 aaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaatttcaccata 5004858  T
Q  174 tgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtat-gggaaa 272  Q
    | ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| ||||||    
T  5004859 taaattcatattttagttgttttgttcttttcaaaagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaa 5004958  T
Q  273 aagcccttacctt 285  Q
    |||||||||||||    
T  5004959 aagcccttacctt 5004971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 86 - 284
Target Start/End: Original strand, 46404612 - 46404813
Alignment:
Q  86 aaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatat 184  Q
    ||||| |||||||||  ||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46404612 aaatgccattccacaaaacattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 46404711  T
Q  185 tttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatggg--aaaaagcccttac 282  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||  |||||||||||||    
T  46404712 tttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaaagcccttac 46404811  T
Q  283 ct 284  Q
    ||    
T  46404812 ct 46404813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 90 - 254
Target Start/End: Complemental strand, 16975450 - 16975285
Alignment:
Q  90 gtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatatttta 188  Q
    |||||||||||| | ||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16975450 gtcattccacataaaattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 16975351  T
Q  189 gttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtactta 254  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  16975350 gttgttttgttcttttcaacaaacaagaatctctacctctaattcataacataatcctagtactta 16975285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 76 - 284
Target Start/End: Original strand, 11967931 - 11968129
Alignment:
Q  76 aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat 174  Q
    ||||||||||||||||||||| ||   ||||| | ||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11967931 aaaataaaataaatgtcattctacggaacatttt-atacacacatcgtataaaatataattaaactaataacttttataaaaggttaaattttaccatat 11968029  T
Q  175 gaattcatattttagttgttttg--ttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaa 272  Q
     |||||||||||||| | |||||  |||||||||      |||||||||||||      ||||||||| ||||||||||||||||||| |||||||||||    
T  11968030 aaattcatattttagattttttgtcttcttttca------aagaatctctacc------tcataacatcatcctagtacttagtatggacgtatgggaaa 11968117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 16475381 - 16475275
Alignment:
Q  182 tattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtat-gggaaaaagccctt 280  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |  ||||| |||||||| | |||    
T  16475381 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactctt 16475282  T
Q  281 accttaa 287  Q
    |||||||    
T  16475281 accttaa 16475275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 16975618 - 16975588
Alignment:
Q  16 atacccgccactaaggcaaactcataggcaa 46  Q
    |||||||||||||||||||||||||||||||    
T  16975618 atacccgccactaaggcaaactcataggcaa 16975588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 44 - 284
Target Start/End: Complemental strand, 9079 - 8840
Alignment:
Q  44 caataccacaaaa-catatatgcatagaaattaaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-cta 141  Q
    ||||||||||||| |||||||| |||||||    ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||    
T  9079 caataccacaaaaacatatatgaatagaaa----aaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaacta 8984  T
Q  142 ataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacata 241  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||    
T  8983 ataactgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgttcttttcaacagacaagaatttatacctctaattcataacata 8884  T
Q  242 atcctagtacttagtatgggcgtat-gggaaaaagcccttacct 284  Q
    |||||||||||||||| |  ||||| ||||||||||||||||||    
T  8883 atcctagtacttagtaagaacgtatggggaaaaagcccttacct 8840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 86 - 283
Target Start/End: Original strand, 15873987 - 15874186
Alignment:
Q  86 aaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatat 184  Q
    ||||| |||||||||  ||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15873987 aaatgccattccacaaaacattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 15874086  T
Q  185 tttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtat-gggaaaaagcccttacc 283  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||||||||||    
T  15874087 tttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 15874186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 76 - 274
Target Start/End: Original strand, 21491537 - 21491737
Alignment:
Q  76 aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat 174  Q
    ||||||||||||||||||||| |||| ||||| | ||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21491537 aaaataaaataaatgtcattctacataacatttt-atgcacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatat 21491635  T
Q  175 gaattcatattttagttgttttgt--tcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaa 272  Q
     |||||||||||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  21491636 aaattcatattttagtttttttgtcttcttttcaaccgacaagaatctctacctctaattcataacatcatcctagtacttagtatggacgtatgggaaa 21491735  T
Q  273 aa 274  Q
    ||    
T  21491736 aa 21491737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 76 - 284
Target Start/End: Complemental strand, 22077841 - 22077633
Alignment:
Q  76 aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat 174  Q
    ||||||||  ||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||||||||    
T  22077841 aaaataaagcaaatgtcattctacataacattatcatacacacatcatataaaatataattaaactaataactttttgaaatggttaaattttaccatat 22077742  T
Q  175 gaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatggga-aaa 273  Q
     |||| ||||||||||||||||  |||| | ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||  | ||||||| |||    
T  22077741 aaatttatattttagttgtttt--tcttcttaacagacaagaatctctacctctaattcataacatcatcctagtacttagtatgaacatatgggaaaaa 22077644  T
Q  274 agcccttacct 284  Q
    |||||||||||    
T  22077643 agcccttacct 22077633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 76 - 286
Target Start/End: Complemental strand, 48576540 - 48576330
Alignment:
Q  76 aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa--ctaataacttttataaaaggttaaattttaccata 173  Q
    |||||| ||||||||||||||  ||| ||||||||||| ||||||||||||| ||||||||||  ||||||||||| |||| |  |||||||||||||||    
T  48576540 aaaatagaataaatgtcattctgcatcacattatcatacacacatcatataatatataattaaaactaataactttaataagatattaaattttaccata 48576441  T
Q  174 tgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtat-gggaaa 272  Q
    | ||||||||||||| || ||||   ||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||    
T  48576440 taaattcatattttaattatttt---ctttttaacggataagaatctctacctctaattcataacattatcccagtacttagtatggacgtatggggaaa 48576344  T
Q  273 aagcccttacctta 286  Q
    ||||||||||||||    
T  48576343 aagcccttacctta 48576330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 125 - 284
Target Start/End: Original strand, 18367412 - 18367576
Alignment:
Q  125 taaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatattttagtt--gtttt-gttcttttcaacggacaagaatct 220  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||  |||||  |||||||||||  ||||||||||    
T  18367412 taaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttaatttggttttctttcttttcaacaaacaagaatct 18367511  T
Q  221 ctacctctaattcataacataatcctagtacttagtatgggcgtat-gggaaaaagcccttacct 284  Q
    |||||| |||||||||||||  ||||||| |||| ||||| ||||| ||||||||||||||||||    
T  18367512 ctacctttaattcataacatcgtcctagttcttattatggacgtatagggaaaaagcccttacct 18367576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 284
Target Start/End: Original strand, 48654339 - 48654478
Alignment:
Q  144 aacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataat 243  Q
    ||||||| ||||  ||||||| ||||||  | |||  ||||||||||||||||  ||||| |||  ||||||||| | ||| ||||||||| ||||| ||    
T  48654339 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 48654436  T
Q  244 cctagtacttagtatgggcgtat-gggaaaaagcccttacct 284  Q
    ||||||||||||||||| ||||| |||||||| |||||||||    
T  48654437 cctagtacttagtatggacgtatggggaaaaaacccttacct 48654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 286
Target Start/End: Complemental strand, 9993427 - 9993289
Alignment:
Q  149 ttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctag 248  Q
    ||||||||  ||| |||||||||||| |||  |||||||| ||||||| ||||||||||  |||||||||   |||| ||| || |||||| |  |||||    
T  9993427 ttataaaatattagattttaccatataaataaatattttaattgttttcttcttttcaaaagacaagaattgttacccctatttaataacaaagccctag 9993328  T
Q  249 tacttagtatgggcgtat-gggaaaaagcccttacctta 286  Q
     |||||||| |  ||| | ||||||||||||||||||||    
T  9993327 cacttagtaagaacgtgtggggaaaaagcccttacctta 9993289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 12911912 - 12911952
Alignment:
Q  244 cctagtacttagtatgggcgtatgggaaaaagcccttacct 284  Q
    ||||| ||||||||||| ||||||||||||| |||||||||    
T  12911912 cctagcacttagtatggacgtatgggaaaaaacccttacct 12911952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 275 - 478
Target Start/End: Original strand, 3190166 - 3190356
Alignment:
Q  275 gcccttaccttaagtactctccttcttagtgtttagaaaatctacccaattgccggaacaagacttcaagaattatcctcccccgaagagtactaatggg 374  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3190166 gcccttaccttaagtgctctccttcttagtgcttaaaaaatctacccaattgccggaacaagacttcaagaattatcctccaccgaagagtactaatggg 3190265  T
Q  375 agaacaaaagatgactttatttagaatgaaattaaaagaattgaagaaaggaatggaagaacagacagtggattgacccttacctcgagactggaataaa 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||| ||| ||||||||||||||||||||| |    
T  3190266 agaacaaaagatgactttatttagaatgaaattaaaagaattgaag-------------aacagacagtggaatgagccttacctcgagactggaatata 3190352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 275 - 373
Target Start/End: Original strand, 22636468 - 22636566
Alignment:
Q  275 gcccttaccttaagtactctccttcttagtgtttagaaaatctacccaattgccggaacaagacttcaagaattatcctcccccgaagagtactaatgg 373  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22636468 gcccttaccttaagtactctccttcttagtgcttagaaaatctacccaattgccggaacaagacttcaagaattatcctccaccgaagagtactaatgg 22636566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 40841568 - 40841652
Alignment:
Q  198 ttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaagcccttac 282  Q
    ||||||||||  |||||||||  ||||| ||| || |||||| | |||||  |||||||| |  |||||||||||||||||||||    
T  40841568 ttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaagaacgtatgggaaaaagcccttac 40841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 125 - 283
Target Start/End: Complemental strand, 536891 - 536731
Alignment:
Q  125 taaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctcta 223  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  536891 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctcta 536792  T
Q  224 cctctaattcataacataatcctagtacttagtatgggcgtat-gggaaaaagcccttacc 283  Q
    |||||||||||||||||||||||||||||||||| |  ||||| |||||||||||||||||    
T  536791 cctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 76 - 284
Target Start/End: Original strand, 4558012 - 4558222
Alignment:
Q  76 aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat 174  Q
    ||||||||||||| ||||||| || | ||||||| ||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  4558012 aaaataaaataaaagtcattctacgtaacattattatacacacattatataaaatatgattaaactaataacttttataaaaggttaaattttaccatat 4558111  T
Q  175 gaattcatattttagttgttttgt-tcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaa 273  Q
     |||||||||||||||| |||| | |||| ||||| ||||||||||||||||||||| ||||||||| |||||| |||||||||| | ||||||||||||    
T  4558112 aaattcatattttagtttttttctctcttctcaacagacaagaatctctacctctaaatcataacatcatcctaatacttagtatagacgtatgggaaaa 4558211  T
Q  274 agcccttacct 284  Q
    |||||||||||    
T  4558212 agcccttacct 4558222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 537014 - 536895
Alignment:
Q  86 aaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatat 184  Q
    ||||| |||||||||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  537014 aaatgccattccacataacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 536915  T
Q  185 tttagttgttttgttctttt 204  Q
    ||||||||||||||||||||    
T  536914 tttagttgttttgttctttt 536895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 76 - 285
Target Start/End: Original strand, 28969223 - 28969432
Alignment:
Q  76 aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat 174  Q
    ||||||||||||||||||||| |||| | ||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  28969223 aaaataaaataaatgtcattctacataaaattatcatacacacatcatatagaatataattaaactaataacttttataaaatgttaaattttaccatat 28969322  T
Q  175 gaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatg-ggaaaa 273  Q
     |||| ||||||||||||||||  |||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||    
T  28969323 aaattaatattttagttgtttt--tcttctcaacagacaagaatttctacctctaattcataacatcatcctagtacttagtatggacgtatgaggaaaa 28969420  T
Q  274 agcccttacctt 285  Q
    | ||||||||||    
T  28969421 aacccttacctt 28969432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 76 - 252
Target Start/End: Complemental strand, 49499221 - 49499045
Alignment:
Q  76 aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat 174  Q
    ||||||||||||||||||||| || | ||||  | ||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  49499221 aaaataaaataaatgtcattctacgtaacatctt-atacacacattatataaaatataattaaactaataatttttataaaaggttaaattttactatat 49499123  T
Q  175 gaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtact 252  Q
     |||||||||||||||| |||| ||||| ||||| |||||||||||| |||||||||||||||||| |||||||||||    
T  49499122 aaattcatattttagttttttttttcttctcaacagacaagaatctccacctctaattcataacatgatcctagtact 49499045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 275 - 471
Target Start/End: Complemental strand, 13652670 - 13652470
Alignment:
Q  275 gcccttaccttaagtactctccttcttagtgtttagaaaat-ctacccaattgccggaacaagacttcaagaattatcctcccccga--agagtactaat 371  Q
    ||||||||||||||| |  |||||| || | |||| | ||| ||||||||||| |||||||||||||| |||||||| || |   ||  ||||||| | |    
T  13652670 gcccttaccttaagtgccttccttcctaatatttaaagaattctacccaattgtcggaacaagacttcgagaattattcttcaatgaggagagtacaagt 13652571  T
Q  372 gggagaacaaaa--gatgactttatttagaatgaaattaaaagaattgaagaaaggaatggaagaacagacagtggattgacccttacctcgagactgga 469  Q
    || |||||||||  |||||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||| || | | ||||||||||| ||||||||    
T  13652570 ggaagaacaaaaaggatgactttatttagaatgagattaaaaggattgaagaaa-gaatagaagaacaaacaatgaaatcacccttacctcaagactgga 13652472  T
Q  470 at 471  Q
    ||    
T  13652471 at 13652470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 275 - 471
Target Start/End: Complemental strand, 13660795 - 13660595
Alignment:
Q  275 gcccttaccttaagtactctccttcttagtgtttagaaaat-ctacccaattgccggaacaagacttcaagaattatcctcccccga--agagtactaat 371  Q
    ||||||||||||||| |  |||||| || | |||| | ||| ||||||||||| |||||||||||||| |||||||| || |   ||  ||||||| | |    
T  13660795 gcccttaccttaagtgccttccttcctaatatttaaagaattctacccaattgtcggaacaagacttcgagaattattcttcaatgaggagagtacaagt 13660696  T
Q  372 gggagaacaaaa--gatgactttatttagaatgaaattaaaagaattgaagaaaggaatggaagaacagacagtggattgacccttacctcgagactgga 469  Q
    || |||||||||  |||||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||| || | | ||||||||||| ||||||||    
T  13660695 ggaagaacaaaaaggatgactttatttagaatgagattaaaaggattgaagaaa-gaatagaagaacaaacaatgaaatcacccttacctcaagactgga 13660597  T
Q  470 at 471  Q
    ||    
T  13660596 at 13660595  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 41868655 - 41868569
Alignment:
Q  199 tcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaagcccttacctt 285  Q
    |||||||||  ||||||||| ||||| ||||||||| ||||| |||||| |||||||||||| ||||||||||||||| ||||||||    
T  41868655 tcttttcaagagacaagaatttctacttctaattcacaacatcatcctaatacttagtatggacgtatgggaaaaagcacttacctt 41868569  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 284
Target Start/End: Complemental strand, 69352 - 69251
Alignment:
Q  181 atattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaagccctt 280  Q
    |||||||| |||||||  |||||||||  |||||||||  ||||| ||| || |||||| | |||||  ||||||||||| ||||||||||||| |||||    
T  69352 atattttaattgtttt--tcttttcaagagacaagaattgctaccactatttaataacacagtcctaacacttagtatggacgtatgggaaaaaaccctt 69255  T
Q  281 acct 284  Q
    ||||    
T  69254 acct 69251  T

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Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 137 - 284
Target Start/End: Original strand, 32735394 - 32735542
Alignment:
Q  137 aactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcata 236  Q
    |||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32735394 aactaatatcttttataaaaggttaaatttcaccatatgaatgcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcata 32735493  T
Q  237 acataatcctagtacttagtatgggcgtat-gggaaaaagcccttacct 284  Q
    |||||||||||| |||||||| |  ||||| ||||||||||||||||||    
T  32735494 acataatcctagcacttagtaagaacgtatggggaaaaagcccttacct 32735542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 263 - 471
Target Start/End: Original strand, 17851930 - 17852140
Alignment:
Q  263 gtatgggaaaaagcccttaccttaagtactctccttcttagtgtttagaaaat-ctacccaattgccggaacaagacttcaagaattatcctcccccga- 360  Q
    ||||||||||  | ||||||||||||| ||||||||| || | | |||| ||| ||||||||||||||||||| ||||||||||||||| || | |  |     
T  17851930 gtatgggaaagtgtccttaccttaagtgctctccttcctaatatatagagaattctacccaattgccggaacacgacttcaagaattattcttcactcag 17852029  T
Q  361 -agagtactaatgggagaacaaaaga-tgactttatttagaatgaaattaaaagaattgaagaaaggaatggaagaacagacagtggattgacccttacc 458  Q
     ||||||| ||||| ||||||||||  |||||||||||||||||||||| |||| |||||||||| |||| |||||||||||| || | |||||||||||    
T  17852030 gagagtacaaatggaagaacaaaagggtgactttatttagaatgaaatt-aaaggattgaagaaa-gaatagaagaacagacaatgaaatgacccttacc 17852127  T
Q  459 tcgagactggaat 471  Q
    || ||||| ||||    
T  17852128 tcaagacttgaat 17852140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 28267692 - 28267795
Alignment:
Q  181 atattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaagccctt 280  Q
    ||||||||||||||||  |||||||||  || |||||| | ||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  28267692 atattttagttgtttt--tcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtatgggaaaaaaccctt 28267789  T
Q  281 acctta 286  Q
    ||||||    
T  28267790 acctta 28267795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 12774954 - 12775057
Alignment:
Q  181 atattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtat-gggaaaaagccct 279  Q
    ||||||||||||||||  ||||| |||  || |||||| | ||| ||||||||| ||||| |||||||||||| |||||| ||||| |||||||||||||    
T  12774954 atattttagttgtttt--tctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgtatggacgtatggggaaaaagccct 12775051  T
Q  280 tacctt 285  Q
    ||||||    
T  12775052 tacctt 12775057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 284
Target Start/End: Complemental strand, 1193743 - 1193599
Alignment:
Q  140 taataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataaca 239  Q
    |||| ||| ||||||||  ||| | |||||||| | |||  |||||||| ||||||| ||||||||||  |||||||||  ||||| ||  || ||||||    
T  1193743 taatcactcttataaaatattagactttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaattgctacccctgtttaataaca 1193644  T
Q  240 taatcctagtacttagtatgggcgtatgggaaaaagcccttacct 284  Q
     | | |||| |||||||| |  | |||||||||||||||||||||    
T  1193643 aagtactagcacttagtaagaacttatgggaaaaagcccttacct 1193599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 40447507 - 40447433
Alignment:
Q  210 gacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatggg-aaaaagcccttacct 284  Q
    |||||||||  ||||||||| || |||||||| || ||| ||||||||||| |||||||| |||||||||||||||    
T  40447507 gacaagaattactacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacct 40447433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 41340858 - 41340892
Alignment:
Q  250 acttagtatgggcgtatgggaaaaagcccttacct 284  Q
    ||||||||||| |||||||||||||||||||||||    
T  41340858 acttagtatggacgtatgggaaaaagcccttacct 41340892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 266
Target Start/End: Complemental strand, 29270792 - 29270654
Alignment:
Q  127 aaatataattaac-taataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacc 225  Q
    ||||||||||||  |||||| ||||||||||  ||||||||||| || | | | ||||||||| ||||||  ||||||||||  |||||||||  |||||    
T  29270792 aaatataattaaaataataatttttataaaatattaaattttactatgtaactacatattttaattgttt--ttcttttcaaaagacaagaattgctacc 29270695  T
Q  226 tctaattcataacataatcctagtacttagtatgggcgtat 266  Q
     ||| || ||| || || ||||  ||||||||||| |||||    
T  29270694 actatttaatagcacaaccctaacacttagtatggacgtat 29270654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 76 - 240
Target Start/End: Complemental strand, 384 - 221
Alignment:
Q  76 aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataatt-aactaataacttttataaaaggttaaattttaccatat 174  Q
    ||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  384 aaaataaaataaatggcattctacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatat 285  T
Q  175 gaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacat 240  Q
      ||| |||||||| || |||  ||||||| |||  ||||||||||||| ||||||||||||||||    
T  284 agatttatattttaattattt--ttctttttaacaaacaagaatctctatctctaattcataacat 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 2645 - 2721
Alignment:
Q  210 gacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatggg-aaaaagcccttacctt 285  Q
    ||||||||| |||||| ||| || |||||| | |||||| |||||||| |  |||||||| ||||||||||||||||    
T  2645 gacaagaatttctaccactattttataacaaagtcctagcacttagtaagaacgtatggggaaaaagcccttacctt 2721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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