View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_low_18 (Length: 481)

Name: NF3376_low_18
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_low_18
NF3376_low_18
[»] chr4 (7 HSPs)
chr4 (297-466)||(29891970-29892143)
chr4 (19-193)||(21685789-21685961)
chr4 (364-466)||(29889006-29889113)
chr4 (356-466)||(29886691-29886805)
chr4 (297-356)||(50831642-50831701)
chr4 (308-355)||(42491210-42491257)
chr4 (319-357)||(52895404-52895442)
[»] chr7 (3 HSPs)
chr7 (298-357)||(49069370-49069429)
chr7 (326-358)||(23679696-23679728)
chr7 (319-351)||(36467781-36467813)
[»] chr2 (2 HSPs)
chr2 (298-355)||(7258449-7258506)
chr2 (319-351)||(14890980-14891012)
[»] chr8 (1 HSPs)
chr8 (310-361)||(10592191-10592242)
[»] chr5 (5 HSPs)
chr5 (308-350)||(38704090-38704132)
chr5 (319-360)||(36321679-36321720)
chr5 (319-355)||(8097397-8097433)
chr5 (297-357)||(21353269-21353329)
chr5 (297-357)||(22972242-22972302)
[»] chr3 (3 HSPs)
chr3 (297-355)||(9719336-9719394)
chr3 (309-355)||(19960522-19960568)
chr3 (308-353)||(11056823-11056868)
[»] chr1 (2 HSPs)
chr1 (297-355)||(51571234-51571292)
chr1 (309-358)||(48261277-48261326)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 297 - 466
Target Start/End: Original strand, 29891970 - 29892143
Alignment:
Q  297 gtaaaataatagttgtctcaatagttgttaatcaaatggttattcaaataacacaactcttatagaattaccctcttttccactaacacatcaacaaatt 396  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  29891970 gtaaaattatggttgtctcaatagttgttaatcaaatggttattcaaataacacaactcttatagagttaccctcttttccactaacacatcaacaagtt 29892069  T
Q  397 ttatccaatgatgtg-----atacatgaatataaagtagatgcatgcgactcttgtttgtgacctcacttgacat 466  Q
    |||| ||||||||||     |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  29892070 ttat-caatgatgtgacaatatacatgaatataaagtagatgcatgtgactcttatttgtgacctcacttgacat 29892143  T

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Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 21685789 - 21685961
Alignment:
Q  19 catctaagcataaggtaagagatgacaacaagtttatggaggctaacggaaaattagatgacgaaaaattattnnnnnnnnnnntagtgcaaacttccca 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||            ||||||||||||||||    
T  21685789 catctaagcataaggtaagagatgacaacaagttcatggaggctaagggaaaattagatgatgaaaaattat--caaaaaaaaatagtgcaaacttccca 21685886  T
Q  119 actttccaagtcatggatttcagcacaaaagtctcgtgttgttttacattagagaaatgatatttgtaaaatcaa 193  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21685887 actttccaagtcatggatttcagcacaaaagtctcgggttgttttacattagagaaatgatatttgtaaaatcaa 21685961  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 364 - 466
Target Start/End: Original strand, 29889006 - 29889113
Alignment:
Q  364 ttaccctcttttccactaacacatcaacaaattttatccaatgatgtg-----atacatgaatataaagtagatgcatgcgactcttgtttgtgacctca 458  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||     || ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  29889006 ttaccctcttttcaactaacacatcaacaagctttatccaatgatgtggcaatatgcatgaatatgaagtagatgtatgtgactcttgtttgtgacctca 29889105  T
Q  459 cttgacat 466  Q
    ||||||||    
T  29889106 cttgacat 29889113  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 356 - 466
Target Start/End: Original strand, 29886691 - 29886805
Alignment:
Q  356 ttatagaattaccctcttttccactaacacatcaacaaattttatccaatgatgtga-----tacatgaatataaagtagatgcatgcgactcttgtttg 450  Q
    ||||||| ||||||| ||||| |||||||||||| |||  |||||||||||||||||     ||||||||||| ||||||||||||| ||||||| ||||    
T  29886691 ttatagagttaccct-ttttcaactaacacatcaccaagctttatccaatgatgtgacaatatacatgaatatgaagtagatgcatgtgactcttttttg 29886789  T
Q  451 tgacctcacttgacat 466  Q
    ||||||||||||||||    
T  29886790 tgacctcacttgacat 29886805  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 50831701 - 50831642
Alignment:
Q  297 gtaaaataatagttgtctcaatagttgttaatcaaatggttattcaaataacacaactct 356  Q
    ||||||| || |||||| ||| |||||| |||||||||||| ||||||||||||||||||    
T  50831701 gtaaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactct 50831642  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 42491210 - 42491257
Alignment:
Q  308 gttgtctcaatagttgttaatcaaatggttattcaaataacacaactc 355  Q
    |||||| ||| |||||| |||||||||||| |||||||||||||||||    
T  42491210 gttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactc 42491257  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 52895404 - 52895442
Alignment:
Q  319 agttgttaatcaaatggttattcaaataacacaactctt 357  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  52895404 agttgtcaatcaaatggttgttcaaataacacaactctt 52895442  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 49069370 - 49069429
Alignment:
Q  298 taaaataatagttgtctcaatagttgttaatcaaatggttattcaaataacacaactctt 357  Q
    |||||| ||||||||| ||| |||||| |||||||||||| |||||||||||||||||||    
T  49069370 taaaattatagttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactctt 49069429  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 23679728 - 23679696
Alignment:
Q  326 aatcaaatggttattcaaataacacaactctta 358  Q
    |||||||| ||||||||||||||||||||||||    
T  23679728 aatcaaatagttattcaaataacacaactctta 23679696  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 36467781 - 36467813
Alignment:
Q  319 agttgttaatcaaatggttattcaaataacaca 351  Q
    ||||||||||||||| |||||||||||||||||    
T  36467781 agttgttaatcaaatagttattcaaataacaca 36467813  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 7258506 - 7258449
Alignment:
Q  298 taaaataatagttgtctcaatagttgttaatcaaatggttattcaaataacacaactc 355  Q
    |||||| ||||||||| ||| | ||||||||||||||||| |||||||||||||||||    
T  7258506 taaaattatagttgtcccaaaaattgttaatcaaatggttgttcaaataacacaactc 7258449  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 351
Target Start/End: Complemental strand, 14891012 - 14890980
Alignment:
Q  319 agttgttaatcaaatggttattcaaataacaca 351  Q
    ||||||||||||||||||| |||||||||||||    
T  14891012 agttgttaatcaaatggttgttcaaataacaca 14890980  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 10592242 - 10592191
Alignment:
Q  310 tgtctcaatagttgttaatcaaatggttattcaaataacacaactcttatag 361  Q
    |||| ||| |||||| |||||||||||| |||||||||||||||||| ||||    
T  10592242 tgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactctaatag 10592191  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 38704132 - 38704090
Alignment:
Q  308 gttgtctcaatagttgttaatcaaatggttattcaaataacac 350  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||    
T  38704132 gttgtcccaaaagttgttaatcaaatggttgttcaaataacac 38704090  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 36321720 - 36321679
Alignment:
Q  319 agttgttaatcaaatggttattcaaataacacaactcttata 360  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||    
T  36321720 agttgttaatcaaatggttgttcaaataacacacctcatata 36321679  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 8097397 - 8097433
Alignment:
Q  319 agttgttaatcaaatggttattcaaataacacaactc 355  Q
    |||||| |||||||||||| |||||||||||||||||    
T  8097397 agttgtcaatcaaatggttgttcaaataacacaactc 8097433  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 21353269 - 21353329
Alignment:
Q  297 gtaaaataatagttgtctcaatagttgttaatcaaatggttattcaaataacacaactctt 357  Q
    ||||||| || |||||| ||| |||||| |||||||||||| || ||||||| ||||||||    
T  21353269 gtaaaattatggttgtcccaaaagttgtcaatcaaatggttgtttaaataactcaactctt 21353329  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 22972242 - 22972302
Alignment:
Q  297 gtaaaataatagttgtctcaatagttgttaatcaaatggttattcaaataacacaactctt 357  Q
    |||||||  |||||||||||| ||||||||   |||||| | |||||||||||||||||||    
T  22972242 gtaaaattttagttgtctcaaaagttgttatataaatggatgttcaaataacacaactctt 22972302  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 9719394 - 9719336
Alignment:
Q  297 gtaaaataatagttgtctcaatagttgttaatcaaatggttattcaaataacacaactc 355  Q
    ||||||| || ||| || ||| |||||| |||||||||||| |||||||||||||||||    
T  9719394 gtaaaattatggttatcccaaaagttgtcaatcaaatggttgttcaaataacacaactc 9719336  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 19960568 - 19960522
Alignment:
Q  309 ttgtctcaatagttgttaatcaaatggttattcaaataacacaactc 355  Q
    ||||||||| |||||| ||||||||| ||| ||||||||||||||||    
T  19960568 ttgtctcaaaagttgtcaatcaaatgattaatcaaataacacaactc 19960522  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 11056868 - 11056823
Alignment:
Q  308 gttgtctcaatagttgttaatcaaatggttattcaaataacacaac 353  Q
    |||||||||| ||||||||  ||||||||| |||||||||||||||    
T  11056868 gttgtctcaaaagttgttatacaaatggttgttcaaataacacaac 11056823  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 51571292 - 51571234
Alignment:
Q  297 gtaaaataatagttgtctcaatagttgttaatcaaatggttattcaaataacacaactc 355  Q
    ||||||| || |||||| ||| | |||| |||||||||||| |||||||||||||||||    
T  51571292 gtaaaattatggttgtcccaaaaattgtcaatcaaatggttgttcaaataacacaactc 51571234  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 48261277 - 48261326
Alignment:
Q  309 ttgtctcaatagttgttaatcaaatggttattcaaataacacaactctta 358  Q
    ||||||||| ||||||  ||||||| | ||||||||||||||||||||||    
T  48261277 ttgtctcaaaagttgtctatcaaataggtattcaaataacacaactctta 48261326  T

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