View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_2 (Length: 896)
Name: NF3376_low_2
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 9 - 619
Target Start/End: Complemental strand, 45594159 - 45593540
Alignment:
| Q |
9 |
agcagagacgaggctgtcgttggagtccactttgcttaattcaggctctacgactaaaacataccctgattactttcttcaactttggcattctgatgtt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45594159 |
agcagagacgaggctgtcgttggagtccactttgcttaattcaggctctacgactaaaacataccctgattactttcttcaactttggcattctgatgtt |
45594060 |
T |
|
| Q |
109 |
ggagagaaatttcgtgcaggagtagtgtgtcaaagcatcgtctcattggaggaatcatgttcagatgtctcattgcaggtgaaaaacaacggaacacaaa |
208 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45594059 |
ggagacaaattccgtgcaggagtagtgtgtcaaagcatcgtctcattggaggaatcatgttcagatgtctcattgcaggtgaaaaacaaccgaacacaaa |
45593960 |
T |
|
| Q |
209 |
gcctgaaagtgtcaacaccaaagcttgaagatgtcaacctgattcaggaacaaaatgccagtagctacaaactgaagattgaagatgatatatctggttc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45593959 |
gcctgaaagtgtcaacaccaaagcttgaagatgtcaacctgattcaggaacaaaatgccagtagctacaaactgaagcttgaagatgatatatctggttc |
45593860 |
T |
|
| Q |
309 |
agattcaggaaattatgaatttcttgatacttctgattctgcactgaagcacctactgcgtatgcccgatgaaataggtttcctgggacataccgacaat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
45593859 |
agattcaggaaattatgaatttcttgatacttctgattctgcactgaagcacctactgcgcatgcctgatgaaataggtttcctgggacatactgacaat |
45593760 |
T |
|
| Q |
409 |
ttcttgaatctccttgatggtagatgtgactaagtgcgtgtttggtatcacggtgagccatcctgataccaatgctttgacaaaccgtgataccaaacat |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45593759 |
ttcttgaatctccttgatggtagatgtgactaagtgcgtgtttggtatcacaatgagccatcctgataccaatgctttgacaaaccgtgataccaaacat |
45593660 |
T |
|
| Q |
509 |
ccactatgttagttagtctcttcaatagagaaaggcaaatactctgatatatggtag----aatagtta-----gttttctcaacctttttgtgatatct |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
45593659 |
ccactatgttagttagtctcttcaatagagaaaggcaaatactctgatatatggtaggtagaatagttagtttagttttctcaacctttttgtgatatct |
45593560 |
T |
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| Q |
600 |
tcatttttgaaaagtgcatg |
619 |
Q |
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||||||||||||| |||||| |
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| T |
45593559 |
tcatttttgaaaaatgcatg |
45593540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 653 - 882
Target Start/End: Complemental strand, 45593539 - 45593311
Alignment:
| Q |
653 |
gtccatgtttagagggggaaaagggtggacagagaatggttagatcaatggattaacaactagtgattttgttcacgttcttcaacaactgttgattatg |
752 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45593539 |
gtccatgtttagagggggaaaagggtggacagagaatggttagatcaatggattaacaactagtgattttgttcacgtccttcaacaactgttgattatg |
45593440 |
T |
|
| Q |
753 |
tgtaattataatgtcccaggtttcatgatgatctgtgttttgttattcacagtgttttcattggtgtatctttcttcgccaacatctaagaatgagtgaa |
852 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45593439 |
tgtaattataatgtcccaggtttcatgatgatctgtgttttgttatt--cagtgttttcattggtgtatctttctttgccaacatctaagaatgagtgaa |
45593342 |
T |
|
| Q |
853 |
ttagt-ggtctaatacaaggactttatattg |
882 |
Q |
| |
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||||| ||||||||||||||||||||||||| |
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|
| T |
45593341 |
ttagtgggtctaatacaaggactttatattg |
45593311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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