View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_20 (Length: 472)
Name: NF3376_low_20
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 21 - 421
Target Start/End: Original strand, 6983786 - 6984187
Alignment:
| Q |
21 |
agagtgcggataagatcttgtgcatccttagcagtagacttaaccattgtcttcaactcttccttctacctatgcagtgaaaaaagagaaagaggttcac |
120 |
Q |
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| T |
6983786 |
agagtgcggataagatcttgtgcatccttagcagtagacttaaccattgtcttcaactcttccttctacctacgcagtgaaaaaagagaaagaggttcac |
6983885 |
T |
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| Q |
121 |
acaaatatggctatagatgctgaaacagaagataattaagtccacttcaaatcacaaaattcagtgcaataagcgacattactaattcttgcatcatatc |
220 |
Q |
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| T |
6983886 |
acaaatatggctatagatgctgaaacagaagataattaagtccacttcaagtcacaatattcagtgcaataagcgacattactaattcttgcatcatatc |
6983985 |
T |
|
| Q |
221 |
ttaacattaaaacatgacaaaaaatcacaatataaagagatataaatacatgatagaaaatgcagtatcaatataagaactctagtaagagagacatatg |
320 |
Q |
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| T |
6983986 |
ttaacattaaaacatgacaaaaaatcacaatataaagagatataaatacatgatagataatgcagtatcaatataagaactctagtaagagagacatatg |
6984085 |
T |
|
| Q |
321 |
cattaatattatctaaagtaaaaagtttgcaaaccttagcaaaagatatttacagtcgaacaaaactaa-ccaagacttctctttatacaagtaaataga |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |
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| T |
6984086 |
cattaatattatctaaagtaaaaagtttgcaaaccttagcaaaagatatttacagtcgaacaaaactaacccacgacttctctttacacaagtaaataga |
6984185 |
T |
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| Q |
420 |
ct |
421 |
Q |
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|| |
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| T |
6984186 |
ct |
6984187 |
T |
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