View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_22 (Length: 464)
Name: NF3376_low_22
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 3963781 - 3963439
Alignment:
| Q |
1 |
aatattgctaaaaaggaagaacagtgaatatgcaaagaaaa-gacaacatccaaattaatagaatagaatgacaaaatacttacaagtacgtgc-aaatt |
98 |
Q |
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| T |
3963781 |
aatattgctaaaaaggaagaacagtgaatatgcaaagaaaccgacaacatccaaattaatagaatagaatgacaaaatacttacaagtacgtgataaatt |
3963682 |
T |
|
| Q |
99 |
caaattgattgaaattttcatgtctttggatatgcaacgttggatgaccaagtaattagttaaattagtaattgattgaagttggttcgtcagaacaaaa |
198 |
Q |
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| T |
3963681 |
caaattgattgaaattttcatgtttttggatatgcaacgttggatgaccaagtaattagttaaattagtaattgattgaagttggttcgtcagaacaaaa |
3963582 |
T |
|
| Q |
199 |
tgaacaccgcggcaagatnnnnnnnnnnnnncaaagacccacataagacaaagaaaataacaacaccgcactacgatgaagaaatccaagaaaagacatt |
298 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3963581 |
tgaacaccgcagcaagataaaaaaaaaaaaacaaagacccacataagacaaagaaaataacaacaccgcactacgatgaagaaatcctagaaaagacatt |
3963482 |
T |
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| Q |
299 |
aaaaagggacttaatttatgtaaagatcacttatttaaattaa |
341 |
Q |
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| T |
3963481 |
aaaaagggacttaatttatttaaagatcacctatttaaattaa |
3963439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 333 - 446
Target Start/End: Complemental strand, 3963052 - 3962939
Alignment:
| Q |
333 |
ttaaattaaaagaggtaaaagatacacgtaggtgatttgaattcaaaaaatgacctaaaaccacatattttggctgctgttttcattggggcgttgcttc |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
3963052 |
ttaaattaaaagaggtaaaagatacacgtaggtgatttgaattcaaaaaataatctaaaaccacgtattttggctgctgttttcattggggtgttgcttc |
3962953 |
T |
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| Q |
433 |
tctttgttatactt |
446 |
Q |
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|||||||||||||| |
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| T |
3962952 |
tctttgttatactt |
3962939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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