View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_23 (Length: 460)
Name: NF3376_low_23
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 23 - 442
Target Start/End: Original strand, 46366745 - 46367151
Alignment:
| Q |
23 |
agcatcatcaatctcaaacatgccctttctttgtccacaaccacgaccatagtgtgaaacaaatccacattatttaatttgtttatagtactacaagttc |
122 |
Q |
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| T |
46366745 |
agcatcatcaatctcaaacatgccctttctttgtccacaaccacgaccatagtgtgaaacaaatccacattatttaatttgtttatagtactacaagttc |
46366844 |
T |
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| Q |
123 |
acaatgacaatgcaaaaacaaatcccgaagttcaaaaaaggaaccggtcttgcccatcatccacagtcttcatcatctttgtccttaatctgctaggagt |
222 |
Q |
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| T |
46366845 |
acaatgacaatgcaaaaacaaatcccgaagttcaaaaaaggaaccggtcttgcc----------------catcatctttgtccttaatctgctaggagt |
46366928 |
T |
|
| Q |
223 |
actacatcttttatgtgatgaaatgaagatagatatataaattgcatgtactatatactagttttattagcaaaagaaaatattaatta------cataa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
46366929 |
actacatcttttatgtgatgaaatgaagatagatatataaattgcatgtactatatactagttttattagcaaaagaaaatataaattacataaccataa |
46367028 |
T |
|
| Q |
317 |
ccataaccatatgtctacatgcggaaacaaaacaagcccatgccttcttcacttgtatatgaaaaacaaatctcagtgactctaagtgcattaaatgtgc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46367029 |
ccataaccatatgtctacatgcggaaacaaaacaagcccatgc---cttcccttgtatatgaaaaacaaatctcagtgactctaagtgcattaaatgtgc |
46367125 |
T |
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| Q |
417 |
catgccatggatccctgtgaatgagc |
442 |
Q |
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| T |
46367126 |
catgccatggatccctgtgaatgagc |
46367151 |
T |
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