View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_24 (Length: 453)
Name: NF3376_low_24
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 18403477 - 18403768
Alignment:
| Q |
1 |
tagtgatagcatttttcaaatcctgttcaagataattctgtttcaatcttatataaaacataacatacctccaagacaaagtttccaacatttccctaag |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18403477 |
tagtgatagcatttctcaaatcctgttcaagataattctgtttcaatcttatataaaacataacatacctccaagacaaagtttccaacatttccctaag |
18403576 |
T |
|
| Q |
101 |
attatgtaacccttcagctgtttgttttatccttaaaactgcatcttcaggggacaatcctggcatnnnnnnntgttctttcataaaagaacgtgtgccc |
200 |
Q |
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| T |
18403577 |
attatgtaacccttcagctgtttgttttatccttaaaactgcatcttcaggggacaatcctggcataaaaaaatgttctttcataaaagaacgtgtgccc |
18403676 |
T |
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| Q |
201 |
caattctgtgctagtgctagtggtgttgttgtaacatgtactactccaaccaatgatgttgctagaaatgttgaaactaaatttcttctatt |
292 |
Q |
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| T |
18403677 |
caattctgtgctagtgctagtggtgttgttgtaacatgtactactccaaccattgatgttgctagaaatgttgaaactaaatttcttctatt |
18403768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 381 - 441
Target Start/End: Original strand, 18403854 - 18403914
Alignment:
| Q |
381 |
gcatggagtagtgtagtggcatgagtgaagctggacatggtattttttgtgtgtggatatt |
441 |
Q |
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| T |
18403854 |
gcatggagtagtgtagtggcatgagtgaagctggacatggtattttttgtgtgtggatatt |
18403914 |
T |
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