View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_25 (Length: 452)
Name: NF3376_low_25
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 33357406 - 33357755
Alignment:
| Q |
1 |
tcatttaattaaatcggtgggaggtttgatatcaatgttgattatagcatgggtttggattatagttgggagttaggtttattcatgtcattcttacctc |
100 |
Q |
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| T |
33357406 |
tcatttaattaaatcggtgggaggtttgatatcaatgttgattatagcatgggtttggattatagttgggagttaggtttattcatgtcattcttacctc |
33357505 |
T |
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| Q |
101 |
tcttattgcctacctggagcaactactctttattattg--tttgagttaaatatgttcatctccacgtaggcaaacttgggt----------agagttgg |
188 |
Q |
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| T |
33357506 |
tcttattgcctacctggggcaactactctttattattgtttttgagttaaatatgttcatctccacgtaggcaaacttgggtagacaatgcaagagttgg |
33357605 |
T |
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| Q |
189 |
acaaataaattaaggccaactcaactcacagtaaaaacatatttagcataaataagcaataggatgtgtgaggtgttactttggcgttaaaaatttagca |
288 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33357606 |
acaaattaattaaggccaactcaactcacagtaaaaacatatttagcataaataagcaatagggtgtgtgaggtgttactttggcgttaaaaatttagca |
33357705 |
T |
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| Q |
289 |
ttttattttaagggacacagttgaaatgacatacaaattatcgtaaaatg |
338 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
33357706 |
ttttattttaagggacacagttcaaatggcatacaaattatcgtaaaatg |
33357755 |
T |
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