View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3376_low_31 (Length: 422)
Name: NF3376_low_31
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_31 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Original strand, 3895980 - 3896374
Alignment:
| Q |
19 |
ctctggcctctaatcattggaggaagatgttttccatcttcctatgatctattcttttagtagaaagttgtattgaagtcaaaagattcgatgaataaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3895980 |
ctctggcctctaatcattggaggaagatgttttccatcttcctatgatctattcttttagtagaaagttgtattgaagtcaaaagattcgatgaataaca |
3896079 |
T |
|
| Q |
119 |
tgtgtactaggttgagtaaatagt---gatttgagatataaaaactacacaaatgtctttgtcccaaattctcaaaattgttaaaattggatgggataag |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896080 |
tgtgtactaggttgagtaaatagttgtgatttgagatataaaaactacacaaatgtctttgtcccaaattctcaaaattgttaaaattggatgggataag |
3896179 |
T |
|
| Q |
216 |
attaataaacaaggctctcataatatggtaacaagtgaacttccatattttgcaagagttttttaaattcagttacaatctaaaaatagatagattaaag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896180 |
attaataaacaaggctctcataatatggtaacaagtgaacttccatattttgcaagagttttttaaattcagttacaatctaaaaatagatagattaaag |
3896279 |
T |
|
| Q |
316 |
agacatttagaagagtttatttgaaacttatttatctcatgtaactataataacattttcataagcttcagtctattggatcgactatgacattc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
3896280 |
agacatttagaagagtttatttgaaacttatttatctcatgtaactataataacattttcataagcttcagtctattggaccgactatgaaattc |
3896374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University