View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_32 (Length: 409)
Name: NF3376_low_32
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_32 |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 49350649 - 49350252
Alignment:
| Q |
1 |
gtaacaacactaaaattttttagcactgaagattagttaccaaagcaaattcatgaactgtttagggttatatttttatacagagaatgaagtcaagtaa |
100 |
Q |
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| T |
49350649 |
gtaacaacactaaaaaaatttagcactgaagattagttaccagagcaaattcatgaactgtttagggttatatttttatacagagaatgaagtcaagtaa |
49350550 |
T |
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| Q |
101 |
attactctaatataaaattaaacattaatgga-ttgcattaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaatgaccatttaca |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49350549 |
attactctaatataaaattaaacattaatggagttgcattaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaatgaccatttaca |
49350450 |
T |
|
| Q |
200 |
aaatcaacccaacatccttcatgaaccataaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactca |
299 |
Q |
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| T |
49350449 |
aaatcaacccaacatccttcatgaaccataaaggatgcagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactca |
49350350 |
T |
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| Q |
300 |
tctttagttcaatcagatacttgtgtgttttaaccttggaggaagtattctacctatgctattccttgaaatgcctcaagattaatggtgatgttgat |
397 |
Q |
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| T |
49350349 |
tctttagttcaatcagatacttgtgtgttttaacattggaggaagtattctacctatgctattccttgaaatgcctcaagattaatggtgatgttgat |
49350252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 250599 - 250559
Alignment:
| Q |
357 |
gctattccttgaaatgcctcaagattaatggtgatgttgat |
397 |
Q |
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| T |
250599 |
gctattccttgaaatgcctcaagattaatggtgatgttgat |
250559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 36663614 - 36663559
Alignment:
| Q |
329 |
ttaaccttggaggaagtattctacctatgctattccttgaaatgcctcaagattaa |
384 |
Q |
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| T |
36663614 |
ttaaccgtggaggaagcattctatctatgttattccttgaaatgcctcaagattaa |
36663559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 324
Target Start/End: Complemental strand, 36663822 - 36663734
Alignment:
| Q |
229 |
aaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtg |
324 |
Q |
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| T |
36663822 |
aaaggaagcagaagctgaggcacttaaagaacccatgt-------caaagattatatcacaacttcagtcttctttagttcaatcaaatacttgtg |
36663734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 397
Target Start/End: Original strand, 13457934 - 13457985
Alignment:
| Q |
346 |
attctacctatgctattccttgaaatgcctcaagattaatggtgatgttgat |
397 |
Q |
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| T |
13457934 |
attctacctatgctattccctgaaatgcatcaagattaatggtgatgctgat |
13457985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 6907 - 6850
Alignment:
| Q |
329 |
ttaaccttggaggaagtattctacctatgctattccttgaaatgcctcaagattaatg |
386 |
Q |
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| T |
6907 |
ttaaccgtggaggaagcattctatctaagttattcattgaaatgcctcaagattaatg |
6850 |
T |
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