View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_35 (Length: 403)
Name: NF3376_low_35
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 30 - 387
Target Start/End: Complemental strand, 4890728 - 4890374
Alignment:
| Q |
30 |
tatccataacatcaatatcatgaattaattgaagaatttaatttcatgaaattggttgaaacttgaaaagaggaagaaatggaaaaactagggttgatat |
129 |
Q |
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| T |
4890728 |
tatccataacatcaatatcatgaattaattaaagaatttaatttcatgaaattggctgaaacttgaaaagaggaagaaatggaaaaactagggttgatat |
4890629 |
T |
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| Q |
130 |
gcccacatcacatcaatatcaccaaacatacttttctcctttctctatatctcttatttgctataattaaaggaacgaatggctcccattattataggtt |
229 |
Q |
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| T |
4890628 |
gcccacatcacatcaatatcaccaaacatacttttctcctttctctatatctcttatttgctataattaaaggaacgaatggctccca---ttataggtt |
4890532 |
T |
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| Q |
230 |
agaattttgaactccaattgttgcaatttcttacaaataaaaacaacatgaatgtgttaaaagttcatcatgatgctcttggttgttgcaattcttgtcc |
329 |
Q |
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| T |
4890531 |
agaattttgaactccaattgttgcaatttcttacaaataaaaacaacatgaatgtgttaaaagttcatcatgatgctcttggttgttgcaattcttgtcc |
4890432 |
T |
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| Q |
330 |
tttctccttattattttctcttgggagttttgttctttatgtatccacacacattttt |
387 |
Q |
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| T |
4890431 |
tttctccttattattttctcttgggagttttgttctttatgtatccacacacattttt |
4890374 |
T |
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