View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_37 (Length: 398)
Name: NF3376_low_37
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 220 - 384
Target Start/End: Original strand, 31261933 - 31262097
Alignment:
| Q |
220 |
tttcatcatcaaaatcaacattttcaccattaccatttccaactacgaaagttaacaaaagatggaaagaataccaaggtatgaccaattgggaaggttt |
319 |
Q |
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| T |
31261933 |
tttcatcatcaaaatcaacattttcaccattaccatttccaactacaaaagttaacaaaagatggaaagaataccaaggtatgaccaattgggaaggttt |
31262032 |
T |
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| Q |
320 |
attagacccattagacaataatcttcgttccgaaatccttcgttatggccattttgttgaagctg |
384 |
Q |
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| T |
31262033 |
attagacccattagacaataatcttcgttccgaaatccttcgttatggccattttgttgaagctg |
31262097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 31261714 - 31261862
Alignment:
| Q |
1 |
agcaaagtagcaaacttccctcattcatttccattctcaacactctttctcactcaccaatcacaatgacatccttaaaccacactacatcccacatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31261714 |
agcaaagtagcaaacttccctcattcatttccattctcaacactctttctcactcaccaatcacaatgacatccttaaaccacactacatcccacatttc |
31261813 |
T |
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| Q |
101 |
tttccccaaaaccacaaccttcactatcaaaccacaatgcataacactt |
149 |
Q |
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| T |
31261814 |
tttccccaaaaccacaaccttcactatcaaaccacaatgcataacactt |
31261862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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