View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_38 (Length: 382)
Name: NF3376_low_38
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 54889751 - 54889398
Alignment:
| Q |
19 |
taaagatcactactattttattgggatgaaacattagtgttggaagtgggaactagaagcctcactatttttattaaacgtttgctattagtgggtgaat |
118 |
Q |
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| T |
54889751 |
taaagatcactactattttattgggatgaaacattagtgttggaagtgggaactagaagcctcactatttttattaaacgtttgctattagtgggtgaat |
54889652 |
T |
|
| Q |
119 |
tgacggtcctttataacacaggaagcctttttattttaaatgtctctcactgaatcactactttgattcttggttgttgcagttactacaactacgaagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54889651 |
tgacggtcctttataacacaggaagcctttttattttaaatgtctctcactgaatcactactttgattcttggttgttgcagttactacaactacgaaac |
54889552 |
T |
|
| Q |
219 |
ctgtggaagcgctagaattgttgagggaaaaaagagatatgtttgaccttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54889551 |
ctgtggaagcgctagaattgttgagggaaaaaagagatatgtttgaccttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttga |
54889452 |
T |
|
| Q |
319 |
gcaagttggacttgaaatagacctacccttcatcagtaagctcacatacctttg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54889451 |
gcaagttggacttgaaatagacctacccttcatcagtaagctcacatacctttg |
54889398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 150 - 370
Target Start/End: Complemental strand, 54895243 - 54895023
Alignment:
| Q |
150 |
tattttaaatgtctctcactgaatcactactttgattcttggttgttgcagttactacaactacgaagcctgtggaagcgctagaattgttgagggaaaa |
249 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
54895243 |
tattttaaatatctctcactgaatcactactttgattcttggttgttgcagttactacaactacgaagtcagtggaagcgcttgaattgttgagggaaaa |
54895144 |
T |
|
| Q |
250 |
aagagatatgtttgaccttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttc |
349 |
Q |
| |
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||| |||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| || ||| |
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| T |
54895143 |
gagaagcatgtttgatcttataattagtgatgtaaacatgccagaaatggatggtttcaagctccttgagcaagttggacttgagatggacctgcctttc |
54895044 |
T |
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| Q |
350 |
atcagtaagctcacatacctt |
370 |
Q |
| |
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|| |||||||| ||| ||||| |
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| T |
54895043 |
attagtaagctaacaaacctt |
54895023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 164 - 372
Target Start/End: Complemental strand, 54905655 - 54905447
Alignment:
| Q |
164 |
ctcactgaatcactactttgattcttggttgttgcagttactacaactacgaagcctgtggaagcgctagaattgttgagggaaaaaagagatatgtttg |
263 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||| |
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|
| T |
54905655 |
ctcactaaatcactagcttgattcttggttgttgcagttactacaactacgaaacctgtggaagcgctagaattgttgagagaaaagaaggatatgtttg |
54905556 |
T |
|
| Q |
264 |
accttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaagctcac |
363 |
Q |
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|||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| |
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| T |
54905555 |
acctagtaattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagttggacttgaaatggatttacctttcatcagtaagctcac |
54905456 |
T |
|
| Q |
364 |
atacctttg |
372 |
Q |
| |
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| ||||||| |
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| T |
54905455 |
acacctttg |
54905447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 358
Target Start/End: Complemental strand, 49061287 - 49061166
Alignment:
| Q |
237 |
tgttgagggaaaaaagagatatgtttgaccttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttgagcaagttggacttgaaat |
336 |
Q |
| |
|
||||||| ||||| | ||| | ||||||||| ||||| ||||||||| |||||| || ||||||||||| ||||| ||||| | || ||||||||||| |
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| T |
49061287 |
tgttgagagaaaacaaagacaagtttgacctggtaatcagtgatgtacacatgccggacatggatggatttaagctgcttgaacttgtgggacttgaaat |
49061188 |
T |
|
| Q |
337 |
agacctacccttcatcagtaag |
358 |
Q |
| |
|
||||| ||| |||| |||||| |
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| T |
49061187 |
ggaccttcccgtcataagtaag |
49061166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 2904663 - 2904734
Alignment:
| Q |
287 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaag |
358 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||| ||||||||||| || |||||||| ||||||||||| |
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| T |
2904663 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaag |
2904734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 2893155 - 2893226
Alignment:
| Q |
287 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaag |
358 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||||| ||||||||||| || |||||||| ||||||||||| |
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|
| T |
2893155 |
atgccagacatggacggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaag |
2893226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 48870519 - 48870461
Alignment:
| Q |
287 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacc |
345 |
Q |
| |
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|||||||| ||||||||||| ||||| ||||||| ||||||||||| || |||||||| |
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|
| T |
48870519 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacc |
48870461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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