View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_42 (Length: 369)
Name: NF3376_low_42
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 34358436 - 34358724
Alignment:
| Q |
13 |
aatatcacccgttgactgacccacaaatatagaaaggaaacnnnnnnnnnnntacaagataaaggaaccaaaatgtttaaaaaggaagaagagaacgatt |
112 |
Q |
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| T |
34358436 |
aatatcacccgttgactgaccaacaaatatagaaaggaaacaaaaaaaaaa-tgcaagataatggaaccaaaatgtttaaaaaggaagaagagaacgatt |
34358534 |
T |
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| Q |
113 |
aatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgata |
212 |
Q |
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| T |
34358535 |
aatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgata |
34358634 |
T |
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| Q |
213 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtgccatgcaagcagcnnnnnnnntggagattcatcgccgaattgcatgctac |
302 |
Q |
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| T |
34358635 |
ctcttcaggtaaaccattggcgtttttcctatgagttgtgccatgcaagcagcaaaaaaaatggagattcatcaccgaattgcatgctac |
34358724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 67 - 257
Target Start/End: Original strand, 34352854 - 34353040
Alignment:
| Q |
67 |
caagataaaggaaccaaaatgtttaaaaaggaagaagagaacgattaatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccat |
166 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||| |||||| |||||||||||||||||||||||| |||||||| |
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| T |
34352854 |
caagataaagaaaccaaaatgtttaaaaaggaagaagagaacaactaatgctgtcacacacac----ctacctgtctttgacactacaacatggctccat |
34352949 |
T |
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| Q |
167 |
aacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaaaccattggcgtttttcctatgagctgtgccatg |
257 |
Q |
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| T |
34352950 |
aagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaaaccattggcgtttttcctatgagctgtaccatg |
34353040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 250
Target Start/End: Original strand, 34369011 - 34369126
Alignment:
| Q |
135 |
tacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaaaccattggcg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| || ||||| | ||| || ||||| ||||||||||| | |
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| T |
34369011 |
tacctgtctttgacactacaacaaggctccataatctcaagcttagcagcaatattagcaacggaaccctttgcgatgctattcagataaaccattggtg |
34369110 |
T |
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| Q |
235 |
tttttcctatgagctg |
250 |
Q |
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| T |
34369111 |
tttttcctatgagctg |
34369126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 34358750 - 34358786
Alignment:
| Q |
333 |
tagtgtgtgaaaccgacctgtgtaatatcatcggcaa |
369 |
Q |
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| T |
34358750 |
tagtgtgtgaaaccgacctgtgtaatatcatcggcaa |
34358786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 34353129 - 34353161
Alignment:
| Q |
337 |
gtgtgaaaccgacctgtgtaatatcatcggcaa |
369 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34353129 |
gtgtgaaaccgacctgtgtaatatcatcggcaa |
34353161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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