View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_43 (Length: 358)
Name: NF3376_low_43
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 5415553 - 5415731
Alignment:
| Q |
18 |
cacattagcaagtggaaccctcagactaatatttaatggtgaagatgatcattttattggaacacttccagctggttctaatttgcaagcttttgtaatc |
117 |
Q |
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| T |
5415553 |
cacattagcaagtggaagcctcagactaatatttaatggtgaagatgatcattttattggaacacttccagctggttctaatttgcaagcttttgtaatc |
5415652 |
T |
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| Q |
118 |
gagttcatatgcactttcttccttatgtttgttattactgcagtagccaccgataacagagcggtaatgtttcctactc |
196 |
Q |
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| T |
5415653 |
gagttcatatgcactttcttccttatgtttgttattactgcagtagccaccgataacagagcggtaatgtttcctactc |
5415731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 5415832 - 5415894
Alignment:
| Q |
285 |
aacttatataaagatatcttttggaagaagagttcttcaaaatagtagtggtatgcttttcat |
347 |
Q |
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| T |
5415832 |
aacttatataaagatatcttttggaataagagttcttcaaaatagtagtggtatgcatttcat |
5415894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 5397650 - 5397759
Alignment:
| Q |
76 |
ggaacacttccagctggttctaatttgcaagcttttgtaatcgagttcatatgcactttcttccttatgtttgttattactgcagtagccaccgataaca |
175 |
Q |
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| T |
5397650 |
ggaacacttccagctggttctgatcttcaagcttttgtggtcgaatttattatcactttcttccttatgttcatcatttctggagttgccactgataata |
5397749 |
T |
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| Q |
176 |
gagcggtaat |
185 |
Q |
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| T |
5397750 |
gagcggtaat |
5397759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 5407186 - 5407130
Alignment:
| Q |
129 |
cactttcttccttatgtttgttattactgcagtagccaccgataacagagcggtaat |
185 |
Q |
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| T |
5407186 |
cactttctaccttatgttcgtcatttctggagttgccaccgataatagagcggtaat |
5407130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 36268289 - 36268448
Alignment:
| Q |
25 |
gcaagtggaaccctcagactaatatttaatggtgaagatgatcattttattggaacacttccagctggttctaatttgcaagcttttgtaatcgagttca |
124 |
Q |
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||||||||||| || ||||||||||||| || || || |||| ||| ||||||||||||||||||| ||| | | ||||||||||| || || |||| |
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| T |
36268289 |
gcaagtggaactcttagactaatatttaccggcaaacataatcaatttgttggaacacttccagctgggtctgaccttcaagcttttgtgattgaattca |
36268388 |
T |
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| Q |
125 |
tatgcactttcttccttatgtttgttattactgcagtagccaccgataacagagcggtaa |
184 |
Q |
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| T |
36268389 |
tcatcactttttaccttatgtttatcatatctggagttgccactgataatagagcggtaa |
36268448 |
T |
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