View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_44 (Length: 356)
Name: NF3376_low_44
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 19021715 - 19022054
Alignment:
| Q |
13 |
aatatcaacaaagttcttccatagacgaacgagaatcaatgatggaagatattttgaacgtgttcatggaacagtctgtgataaacatgcagaataccaa |
112 |
Q |
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| T |
19021715 |
aatatcaacaaagttcttccatagacgaacgagaatcaatgatggaagatattttgaacgtgttcatggaacagtctgtgataaacatgcagaataccaa |
19021814 |
T |
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| Q |
113 |
acgcaaattgaagaatttgtcatgtacgttggagatgatgagtgcacaactagcttttttgtcactaaacatggaaagtcaaatcaacactaaaaccatt |
212 |
Q |
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| T |
19021815 |
acgcaaattgaagaatttgtcatgtacgttggagatgatgagtgcacaactagcttttttgtcactaaacatggaaagtcaaatcaacactaaaaccatt |
19021914 |
T |
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| Q |
213 |
atggaagatcaagacgataatccaagtgatgacgaggtatttaaaaagagtcttggagaggatgttgaggaggaagcgatagaattataggatgtggaat |
312 |
Q |
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| T |
19021915 |
atgaaagatcgagacgataatccaagtgatgacgaggcatttaaaaagagtcttggagaggatgttgaggaggaagcgatagaattataggatgtggaat |
19022014 |
T |
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| Q |
313 |
aatgaaaatagtagaaggaatagagacgtcacatgaagta |
352 |
Q |
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| T |
19022015 |
aatgaaaatagtagaaggaatagagacgtcacatgaagta |
19022054 |
T |
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