View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_45 (Length: 348)
Name: NF3376_low_45
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 32726809 - 32726488
Alignment:
| Q |
11 |
cacagaagtccggcaaaaccgaatatgaaatacgagaccttcggcggccaggtcgatggcgatgctggatcactcgaagctggcgggggataagtagacc |
110 |
Q |
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| T |
32726809 |
cacagaagtccggcaaaaccgaatatgaaatacgagaccttcggcggctaggtcgatggcgatgctggatcactcgaagttggcgggggataagtaaacc |
32726710 |
T |
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| Q |
111 |
tcaccatcaggtcaacaatgaccccgatgatgacggtcaacaaacaaaaaatgcaaaccttcacggaagacatcactacaaaaggaa-aaaaggataaat |
209 |
Q |
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| T |
32726709 |
tcaccatcgggtcaacaatgaccccgatgatgacggtcaacaaacaaaaaatgcaaaccttcacggaagacatcactacaaaaggaaaaaaaggataaat |
32726610 |
T |
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| Q |
210 |
caagtgtgcaaaggttgtcatagtaaacatgttttgcatagaataacttgaatctaaactatgcgtttacttgatgttaaaaataatatttaaatcatac |
309 |
Q |
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| T |
32726609 |
c-agtgtgcaaaggttgtcgtagtaaacatgttttgcatagaataacttgaatctaaactatgcgtttacttgatgttaaaaataatatttaaatcatcc |
32726511 |
T |
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| Q |
310 |
ttgatatcatgttatataaatta |
332 |
Q |
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||||||| ||||||||||||||| |
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| T |
32726510 |
ttgatattatgttatataaatta |
32726488 |
T |
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