View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_low_46 (Length: 347)

Name: NF3376_low_46
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_low_46
NF3376_low_46
[»] chr2 (2 HSPs)
chr2 (17-326)||(29238955-29239265)
chr2 (300-332)||(41933215-41933247)
[»] chr5 (3 HSPs)
chr5 (171-216)||(25256994-25257039)
chr5 (171-216)||(25320784-25320829)
chr5 (299-337)||(7968469-7968507)
[»] chr1 (4 HSPs)
chr1 (264-337)||(45640625-45640696)
chr1 (298-329)||(38748709-38748740)
chr1 (300-337)||(2864221-2864258)
chr1 (297-329)||(14746187-14746219)
[»] chr7 (3 HSPs)
chr7 (296-332)||(39320968-39321004)
chr7 (299-329)||(35731374-35731404)
chr7 (299-337)||(44537420-44537458)
[»] chr4 (2 HSPs)
chr4 (299-330)||(45900138-45900169)
chr4 (299-337)||(7852533-7852571)
[»] chr8 (2 HSPs)
chr8 (299-329)||(33013132-33013162)
chr8 (301-337)||(3146119-3146155)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 29238955 - 29239265
Alignment:
Q  17 tgtgcacaggtgtagttgtattggttgaaccgcgagtctgccatgtttagaaacaccgaggcgattcaagaagaaccctaattgtaaaaaagttaaacac 116  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  29238955 tgtgcaccggtgtagttgtattggttgaaccgcgagtctgccatgtttggaaacaccgaggcggttcaagaagaaccctaattgtaaaaaagttacacac 29239054  T
Q  117 tattagcttaaatagtcgatcaagggctaacatatctaagttaggtcctctgattttgctaaaattaaatggacaatgtcattttgtgagagatggatac 216  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29239055 tatttgcttaaatagtcgatcaagggctaaaatatctaagttaggtcctctgattttgctaaaattaaatggacaatgtcattctgtgagagatggatac 29239154  T
Q  217 nnnnnnntatgtagtagatcttaccattaagtgtttctcactactaataattattgggaaatgttaaggagcatcccggtgagg-cactctttaagcact 315  Q
           ||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |||| |   || |||||||||||||||    
T  29239155 aaaaaaatatgtagtagatcttaccattaagtatttctcactactattaattattggaaaatgttaaggagcgtccccgacgggacactctttaagcact 29239254  T
Q  316 ttaattagtaa 326  Q
    |||||||||||    
T  29239255 ttaattagtaa 29239265  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 41933247 - 41933215
Alignment:
Q  300 gcactctttaagcactttaattagtaagttttt 332  Q
    ||||||||||||||||||||||||||| |||||    
T  41933247 gcactctttaagcactttaattagtaaattttt 41933215  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 25257039 - 25256994
Alignment:
Q  171 tttgctaaaattaaatggacaatgtcattttgtgagagatggatac 216  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||    
T  25257039 tttgctaaaaataaatggacaatgtcattttgtgagagatagatac 25256994  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 25320829 - 25320784
Alignment:
Q  171 tttgctaaaattaaatggacaatgtcattttgtgagagatggatac 216  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||    
T  25320829 tttgctaaaaataaatggacaatgtcattttgtgagagatagatac 25320784  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Complemental strand, 7968507 - 7968469
Alignment:
Q  299 ggcactctttaagcactttaattagtaagtttttgatga 337  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  7968507 ggcactctttaagcactttaaatagtaagtttttaatga 7968469  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 45640696 - 45640625
Alignment:
Q  264 taattattgggaaatgttaaggagcatcccggtgaggcactctttaagcactttaattagtaagtttttgatga 337  Q
    |||||||||||||||||||| |||  |||| | ||  ||||||||||||| ||||| |||||||||||||||||    
T  45640696 taattattgggaaatgttaacgagtgtccccgaga--cactctttaagcattttaaatagtaagtttttgatga 45640625  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 329
Target Start/End: Original strand, 38748709 - 38748740
Alignment:
Q  298 aggcactctttaagcactttaattagtaagtt 329  Q
    ||||||||||||||||||||||||||||||||    
T  38748709 aggcactctttaagcactttaattagtaagtt 38748740  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 2864258 - 2864221
Alignment:
Q  300 gcactctttaagcactttaattagtaagtttttgatga 337  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  2864258 gcactctttaagcactttaaatagtaagtttttaatga 2864221  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 14746187 - 14746219
Alignment:
Q  297 gaggcactctttaagcactttaattagtaagtt 329  Q
    ||||||||||| |||||||||||||||||||||    
T  14746187 gaggcactcttcaagcactttaattagtaagtt 14746219  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 39320968 - 39321004
Alignment:
Q  296 tgaggcactctttaagcactttaattagtaagttttt 332  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39320968 tgagacactctttaagcactttaattagtaagttttt 39321004  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 329
Target Start/End: Complemental strand, 35731404 - 35731374
Alignment:
Q  299 ggcactctttaagcactttaattagtaagtt 329  Q
    |||||||||||||||||||||||||||||||    
T  35731404 ggcactctttaagcactttaattagtaagtt 35731374  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Complemental strand, 44537458 - 44537420
Alignment:
Q  299 ggcactctttaagcactttaattagtaagtttttgatga 337  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  44537458 ggcactctttaagcactttaaatagtaagtttttaatga 44537420  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 330
Target Start/End: Original strand, 45900138 - 45900169
Alignment:
Q  299 ggcactctttaagcactttaattagtaagttt 330  Q
    ||||||||||||||||||||||||||||||||    
T  45900138 ggcactctttaagcactttaattagtaagttt 45900169  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 7852533 - 7852571
Alignment:
Q  299 ggcactctttaagcactttaattagtaagtttttgatga 337  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  7852533 ggcactctttaagcactttaaatagtaagtttttaatga 7852571  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 329
Target Start/End: Complemental strand, 33013162 - 33013132
Alignment:
Q  299 ggcactctttaagcactttaattagtaagtt 329  Q
    |||||||||||||||||||||||||||||||    
T  33013162 ggcactctttaagcactttaattagtaagtt 33013132  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 3146155 - 3146119
Alignment:
Q  301 cactctttaagcactttaattagtaagtttttgatga 337  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  3146155 cactctttaagcactttaaatagtaagtttttaatga 3146119  T

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