View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_low_48 (Length: 338)

Name: NF3376_low_48
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_low_48
NF3376_low_48
[»] scaffold0864 (2 HSPs)
scaffold0864 (19-129)||(4196-4306)
scaffold0864 (191-338)||(3986-4131)
[»] chr2 (3 HSPs)
chr2 (17-129)||(22589323-22589435)
chr2 (191-252)||(22589499-22589560)
chr2 (300-338)||(22589587-22589625)
[»] chr6 (7 HSPs)
chr6 (21-85)||(5264465-5264529)
chr6 (21-93)||(5360732-5360804)
chr6 (300-338)||(5332418-5332456)
chr6 (24-61)||(5077303-5077340)
chr6 (24-69)||(5422042-5422087)
chr6 (25-69)||(5070638-5070682)
chr6 (21-93)||(5331994-5332066)


Alignment Details
Target: scaffold0864 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 4306 - 4196
Alignment:
Q  19 gtagaacgagtatccactcccctgaaacttaagaacacatcatgaatccttacagattctgatattggtcctggaccagagcctagttcccaactatgcc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||    
T  4306 gtagaacgagtatccactcccctgaaacttaagaacacatcatgaatccttacagattctgatattggtcctggaccagagaatagttcccaactatacc 4207  T
Q  119 gtttcagccct 129  Q
    |||||||||||    
T  4206 gtttcagccct 4196  T

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Target: scaffold0864; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 338
Target Start/End: Complemental strand, 4131 - 3986
Alignment:
Q  191 tgatttgaaagaactcaattctattcaatgtgcgggttcaaa-------ctaaattcatgtaatacattctagatccatcggagacattgttcccgagct 283  Q
    |||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||| |  ||||||||||| |||||||||||||  | |    
T  4131 tgatttgaaagaactcaattctattcaatgtgtgggttcaaagttcaaactaaattcatgtaatacttcttagatccatcgcagacattgttcccctggt 4032  T
Q  284 aatcgaagnnnnnnncggcatggatgaggaagactcggagttcttttccttcccc 338  Q
    ||  ||          |||||||||||||||||||||||||||||||||||||||    
T  4031 aa--ga-------ttaggcatggatgaggaagactcggagttcttttccttcccc 3986  T

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Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 22589323 - 22589435
Alignment:
Q  17 acgtagaacgagtatccactcccctgaaacttaagaacacatcatgaatccttacagattctgatattggtcctggaccagagcctagttcccaactatg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  |||    
T  22589323 acgtagaacgagtatccactcccctgaaacttaagaacacatcatgaatccttacagattctgatattggtcctggacaagagcctagttccaaaacatg 22589422  T
Q  117 ccgtttcagccct 129  Q
    || ||||||||||    
T  22589423 ccatttcagccct 22589435  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 22589499 - 22589560
Alignment:
Q  191 tgatttgaaagaactcaattctattcaatgtgcgggttcaaactaaattcatgtaatacatt 252  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22589499 tgatttgaaagaactcaattctattcaatgtgcgcgttcaaactaaattcatgtaatacatt 22589560  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 22589587 - 22589625
Alignment:
Q  300 ggcatggatgaggaagactcggagttcttttccttcccc 338  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  22589587 ggcatggatgaggaagactcggagttcttttcattcccc 22589625  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 5264465 - 5264529
Alignment:
Q  21 agaacgagtatccactcccctgaaacttaagaacacatcatgaatccttacagattctgatattg 85  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  5264465 agaacgagtatcctctcccctgaaacttaagaacacgtcatgaatccttacaaattctgatattg 5264529  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 5360804 - 5360732
Alignment:
Q  21 agaacgagtatccactcccctgaaacttaagaacacatcatgaatccttacagattctgatattggtcctgga 93  Q
    ||||||||||||| ||||||| |||||||||||||| || ||||||| || |||||||||||||||| |||||    
T  5360804 agaacgagtatcctctcccctaaaacttaagaacacgtcgtgaatccctatagattctgatattggttctgga 5360732  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 5332418 - 5332456
Alignment:
Q  300 ggcatggatgaggaagactcggagttcttttccttcccc 338  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5332418 ggcatggatgaggatgactcggagttcttttccttcccc 5332456  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 5077303 - 5077340
Alignment:
Q  24 acgagtatccactcccctgaaacttaagaacacatcat 61  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  5077303 acgagtgtccactcctctgaaacttaagaacacatcat 5077340  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 5422087 - 5422042
Alignment:
Q  24 acgagtatccactcccctgaaacttaagaacacatcatgaatcctt 69  Q
    |||||||||| |||| || |||||||||||||||||||| ||||||    
T  5422087 acgagtatcctctcctctaaaacttaagaacacatcatggatcctt 5422042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 5070638 - 5070682
Alignment:
Q  25 cgagtatccactcccctgaaacttaagaacacatcatgaatcctt 69  Q
    ||||| ||| |||| ||||||||||||||||||||||| ||||||    
T  5070638 cgagtgtcctctcctctgaaacttaagaacacatcatggatcctt 5070682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 5331994 - 5332066
Alignment:
Q  21 agaacgagtatccactcccctgaaacttaagaacacatcatgaatccttacagattctgatattggtcctgga 93  Q
    |||| |||||||| | ||||||||||||||||| |  || |||||||||||| |||| |||||| || |||||    
T  5331994 agaatgagtatcctcccccctgaaacttaagaatatgtcgtgaatccttacaaattccgatattagttctgga 5332066  T

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