View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3376_low_5 (Length: 785)
Name: NF3376_low_5
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 16687005 - 16687454
Alignment:
| Q |
18 |
taatgtgagtgttactgctggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttggagatggatcttttaatatgacaacaagg |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16687005 |
taatgtgagtgttactgcgggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttggagatggatcttttaatatgacaacaaga |
16687104 |
T |
|
| Q |
118 |
acaacatttcatgggaaagtgcatttgctgaagattattaagataaaggcattggttaatatgtattgtgatatattgtttaaaatggatccaatggatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16687105 |
acaacatttcatgggaaagtgcatttgctgaagattatcaagataaaggcattggttaatatgtattgtgatatattgtttaaaatggatccaatggatg |
16687204 |
T |
|
| Q |
218 |
ctgtttctagctgtgtaacccatatgagggttctgtaattggggcannnnnnnnngtag----ttgcgattgcaattttaataaaaatgcttctggttaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16687205 |
ctgtttctagctgtgtaacccatatgagggttctgtaattggggcttttttttttgtagttgcttgctattgcaattttaataaaaatgcttctggttaa |
16687304 |
T |
|
| Q |
314 |
gaaaaagaattattactcctgtttatggcttcagcatttcattgtatatattattgatacttcttctgatctttctattctaaatgtttgtaaccaaagt |
413 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16687305 |
gaaaaaga---attactcctgtttatggcttcagcatttcattgtatatattattgatacttcttctgatctttctattctaaatgtttgtaaccaaagt |
16687401 |
T |
|
| Q |
414 |
tggagtactcgagttaaagatcacatgcgtctttcagacatcattgatgtgtt |
466 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
16687402 |
tggagtactcgagttaacgatcacatgtttctttcagacatcattgatgtgtt |
16687454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 478 - 775
Target Start/End: Original strand, 16687639 - 16687936
Alignment:
| Q |
478 |
aggatataaaagtgcgacttaatgtcacactcaagctacgatgacaatttcacaacttttcgcacgctttcctcctcatttctcttcactcatttgagcg |
577 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
16687639 |
aggatatagaagcgcgacttaacgtcacactcaagctacgatgacaatttcaccacttttcgcacactttcctcctcatttctcgtcactcatttgagcg |
16687738 |
T |
|
| Q |
578 |
ttagagtgctgacttgttttgcaagtctctttccgctcgccagagaattatctcatccgctccataatctttcctccctcgcacttgactctgatcaata |
677 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16687739 |
ttagagtgctaacttgttttgcaagtctctttccgctcgccagagaattatctcatccgctccataatctttcctccctcgcacttgactctgatcaata |
16687838 |
T |
|
| Q |
678 |
gcatgatcatattcgacaatgcatctctaccctggtctactccaaaacattggcactggaaggagggaaaacttcatcgtttccattggagtcctttg |
775 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16687839 |
gcatgatcatattcgacaatgcatctctaccctggtctactccaaaacattggcactggaaggagggaaaacttcatcgtttccatcggagtcctttg |
16687936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 16619838 - 16619960
Alignment:
| Q |
19 |
aatgtgagtgttactgctggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttggagatggatcttttaatatgacaacaagga |
118 |
Q |
| |
|
|||||||||| |||||| |||||||||||| | ||||| ||||||| || ||| ||| ||||||| |||||||||||||||| | ||| ||| | |
|
|
| T |
16619838 |
aatgtgagtgctactgcaggtcttatgagtgtagagttgatatctaatgataagtttttggtggatgttgcagatggatcttttaatttcacagcaaagg |
16619937 |
T |
|
| Q |
119 |
caacatttcatgggaaagtgcat |
141 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
16619938 |
caatatttcatgggaaagtgcat |
16619960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 16644805 - 16644928
Alignment:
| Q |
18 |
taatgtgagtgttactgctggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttggagatggatcttttaatatgacaacaagg |
117 |
Q |
| |
|
|||||||| || ||||||||||||||||| | | || ||||| ||||||| || ||| ||| ||||||| | |||||||||||||| | ||| ||| | |
|
|
| T |
16644805 |
taatgtgactgctactgctggtcttatgaatgaaaagttgatatctaatgataagtttttggtggatgttgcacatggatcttttaatctaacagcaaag |
16644904 |
T |
|
| Q |
118 |
acaacatttcatgggaaagtgcat |
141 |
Q |
| |
|
||||| ||| ||||||||||||| |
|
|
| T |
16644905 |
gcaacacttcgtgggaaagtgcat |
16644928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University