View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_54 (Length: 325)
Name: NF3376_low_54
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 36508715 - 36509022
Alignment:
| Q |
1 |
ttcctaccttgtcgccttccaagtcatcacatagccttagaattttggctgttgtagatataatggttgggaagtcatccattagagacacggttttctc |
100 |
Q |
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| T |
36508715 |
ttcctaccttatcgccttccaagtcatcacatagccttagaattttggctgttgtagatataatggttgggaagtcatccattagagacacggttttctc |
36508814 |
T |
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| Q |
101 |
agttataccttgacccatggaaaagaaagcatgcacaagtatcacgtgtaccccagtgcttactatggcattcttcaaatactcctctgactttggaaca |
200 |
Q |
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| T |
36508815 |
agttataccttgacccatgcaaaagaaagcatgcacaagtatcacgtgtaccccagtgcttactatggcattcttcaaatactcctctgactttggaaca |
36508914 |
T |
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| Q |
201 |
ttcccagaagcaaaccattttgcttcttgcaagaaagcattcaagagtcttacccactgtaattaattaacaaccaaattaatcacaattaattaagtag |
300 |
Q |
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| T |
36508915 |
ttcccagaagcaaaccattttgcttcttgcaagaaagcattcaagagtcttacccactgtaattaattaacaaccaaattaatcacaattaattaagtag |
36509014 |
T |
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| Q |
301 |
aagataac |
308 |
Q |
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|||||||| |
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| T |
36509015 |
aagataac |
36509022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 37339273 - 37339314
Alignment:
| Q |
5 |
taccttgtcgccttccaagtcatcacatagccttagaatttt |
46 |
Q |
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| T |
37339273 |
taccttgtcgctttccaagtcatcacataaccttagaatttt |
37339314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 37339930 - 37339997
Alignment:
| Q |
57 |
gatataatggttgggaagtcatccattagagacacggttttctcagttataccttgacccatggaaaa |
124 |
Q |
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| T |
37339930 |
gatataatggtagggaagttgtccattagagactcggttttttcaattatatctttacccatgtaaaa |
37339997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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