View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_56 (Length: 314)
Name: NF3376_low_56
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 37 - 306
Target Start/End: Original strand, 48591817 - 48592086
Alignment:
| Q |
37 |
cggtagggtatactttgaaaagttattaacagttatccaaaatataacgccatgcatataagtttgattcacaacacttctcaattgtgcattcaaaacg |
136 |
Q |
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| T |
48591817 |
cggtagggcatactttgaaaagttattaacagttatccaaaatataaggccatgcatataagtttgaatcacaacacttctcaattgtgcattcaaagtg |
48591916 |
T |
|
| Q |
137 |
aataaaccaatatgatttcccattccttctcattagctatgattttgctcctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48591917 |
aataaaccaatatgatttcccattccttctcattagctatgattttgctcctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaa |
48592016 |
T |
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| Q |
237 |
gtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctc |
306 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592017 |
gttgcatgcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctc |
48592086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 37 - 306
Target Start/End: Original strand, 48601512 - 48601781
Alignment:
| Q |
37 |
cggtagggtatactttgaaaagttattaacagttatccaaaatataacgccatgcatataagtttgattcacaacacttctcaattgtgcattcaaaacg |
136 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
48601512 |
cggtagggcatactttgaaaagttattaacagttatccaaaatataaggccatgcatataagtttgaatcacaacacttctcaattgtgcattcaaagtg |
48601611 |
T |
|
| Q |
137 |
aataaaccaatatgatttcccattccttctcattagctatgattttgctcctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaa |
236 |
Q |
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| T |
48601612 |
aataaaccaatatgatttcccattccttctcattagctatgattttgctcctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaa |
48601711 |
T |
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| Q |
237 |
gtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctc |
306 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48601712 |
gttgcatgcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctc |
48601781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 48597388 - 48597484
Alignment:
| Q |
37 |
cggtagggtatactttgaaaagttattaacagttatccaaaatataacgccatgcatataagtttgattcacaacacttctcaattgtgcattcaaa |
133 |
Q |
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|||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597388 |
cggtagggcatactttgaaaatttattaacggttatccaaaatataacgccatgcatataagtttgattcacaacacttctcaattgtgcattcaaa |
48597484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 306
Target Start/End: Complemental strand, 23232421 - 23232246
Alignment:
| Q |
128 |
ttcaaaacgaataaaccaatatgatttcccattccttctcattagctatgattttgctcctatttcttttcatttttcagcttctctcttacttaaagag |
227 |
Q |
| |
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|||||| | |||||| ||| |||||||| |||||||||| ||||||||||||| ||||||| |||||||| || | | ||| |||| ||| ||||| |
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| T |
23232421 |
ttcaaagctaataaaacaagatgatttctcattccttcttattagctatgattgtgctccttcttcttttccttctcccacttttctccgtctttaagag |
23232322 |
T |
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| Q |
228 |
aaacaagaagtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctc |
306 |
Q |
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||||||||| || || ||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23232321 |
aaacaagaaatcacaaccacatttacc-cctc--cctccaagtccaccaacaataccaataattggacatcttcatctc |
23232246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 23224964 - 23224913
Alignment:
| Q |
255 |
acctcaccctccaagtccaccagcaataccaataattggacatcttcatctc |
306 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
23224964 |
accttaccctccaagtccactagcaataccaataattggtcatcttcatctc |
23224913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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