View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_57 (Length: 313)
Name: NF3376_low_57
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 9442019 - 9441733
Alignment:
| Q |
11 |
cacagagcaaggaagaggaagcaaagcaaattctgtcgaaaatctatcgaccgggagaagttgaagaggagatgaaagccatgcatgaatccattgaagc |
110 |
Q |
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| T |
9442019 |
cacagagcaaggaagaggaagcaaagcaaattctgtcgaaaatctatcgaccgggagaagttgaagaggagatgaaagccatgcatgaatccattgaagc |
9441920 |
T |
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| Q |
111 |
cgagaaggcagaggatgtcttgatcggccatagtcttgcacaaaaactaaagggtgcctggtctaatgacgtagttcgaagaggactctatgcaggcatc |
210 |
Q |
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| T |
9441919 |
cgagaaggcagaggatggcttgatcggccatagtcttgcacaaaaactaaagggtgcctggtctaatgacgtagttcgaagaggactctacgcaggcatc |
9441820 |
T |
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| Q |
211 |
actgtccaagttgttcaacaaattgtcggtattaatacaatcatgtattacagcccaaccatagttcagtttgctggaattgcctcc |
297 |
Q |
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| T |
9441819 |
actgtccaagttgttcaacaaattgtcggtattaatacaatcatgtattacagcccaaccatagttcagtttgctggaattgcctcc |
9441733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 9453248 - 9452964
Alignment:
| Q |
13 |
cagagcaaggaagaggaagcaaagcaaattctgtcgaaaatctatcgaccgggagaagttgaagaggagatgaaagccatgcatgaatccattgaagccg |
112 |
Q |
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| T |
9453248 |
cagagcaaggaggaggaagcaaagattattctgacaaaaatctatcgccccggtgaagttgcagacgaaatgaaagccatgcatgaatccattgaagccg |
9453149 |
T |
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| Q |
113 |
agaaggcagaggatgtcttgatcggccatagtcttgcacaaaaactaaagggtgcctggtctaatgacgtagttcgaagaggactctatgcaggcatcac |
212 |
Q |
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| T |
9453148 |
agaaggcagaggaaggcttgatcggtcatagtcttgcacaaaaactaaagggtgcttggtctaatgacgtagttcgaagaggactctacgcaggcattac |
9453049 |
T |
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| Q |
213 |
tgtccaagttgttcaacaaattgtcggtattaatacaatcatgtattacagcccaaccatagttcagtttgctggaattgcctcc |
297 |
Q |
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| T |
9453048 |
tgtccaagttgttcaacaatttgtcggtattaatacagtcatgtattacagcccaactatagttcagtttgcaggaattgcctcc |
9452964 |
T |
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