View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_59 (Length: 307)
Name: NF3376_low_59
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 29015717 - 29015995
Alignment:
| Q |
11 |
cagagagtttgagagataaatcagtaagaaaaagatggtggggtgaagatttagctgaattgaaaattgatctttattggagaatcatgattgctttaaa |
110 |
Q |
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| T |
29015717 |
cagaaagtttgagagataaatcagtaagaaaaggatggtggggtgaagatttagctgaattgaaaattgatctttattggagaatcatgattgctttaaa |
29015816 |
T |
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| Q |
111 |
atctgatggaaaaatgcctttaaatctcatcggtgatgcgttgaaaatttatgcttctagatggctaccaaaaactggttctgattctgattcaagaagt |
210 |
Q |
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| T |
29015817 |
atctgatggaaaaatgcctttaaatctcatcggtgatgcgttgaaaatttatgcttctagatggctaccaaaaaccggttccgattctgattcaagaagt |
29015916 |
T |
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| Q |
211 |
gaaatagcatcaaagtacagtttgcttttagaatcaatagtgaatttgcttccggctgcaaaaggcgttgtttcttgta |
289 |
Q |
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| T |
29015917 |
gaaatagcatcaaagtacagtttgcttttagaatcaatagtgaatttgcttccagctgcaaaaggtgttgtttcttgta |
29015995 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 14129263 - 14129434
Alignment:
| Q |
11 |
cagagagtttgagagataaatcagtaagaaaaagatggtggggtgaagatttagctgaattgaaaattgatctttattggagaatcatgattgctttaaa |
110 |
Q |
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|||| ||||||||| ||||||| ||| ||| ||||||||| |||||||||||| || | | || || ||||||||||||| ||||| || | || |
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| T |
14129263 |
cagaaagtttgagaatcaaatcaggaagtaaaggatggtgggctgaagatttagcagagcttagcatagacctttattggagaacaatgatagcaatcaa |
14129362 |
T |
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| Q |
111 |
atctgatggaaaaatgcctttaaatctcatcggtgatgcgttgaaaatttatgcttctagatggctaccaaa |
182 |
Q |
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||||| ||| || | |||| ||||||||| || ||||| |||||||||||||| ||||||||| ||||||| |
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| T |
14129363 |
atctggtggcaaggttccttcaaatctcattggcgatgcattgaaaatttatgcatctagatggttaccaaa |
14129434 |
T |
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