View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_6 (Length: 765)
Name: NF3376_low_6
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 405 - 760
Target Start/End: Complemental strand, 28601510 - 28601155
Alignment:
| Q |
405 |
cctcgatcgttatcaatttaagtttgagaatacttagttggtggagcctgaatttgataactctgttcttcagtgttagtaatcttactatggagacatg |
504 |
Q |
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| T |
28601510 |
cctcgatcgttatcaatttaagtttgagaatacttagttggtggagcctgaatttgataactctgttcttcagtgttagtaatcttactatggagacatg |
28601411 |
T |
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| Q |
505 |
ataaataagccatggatatcatgaaacggagtaaggaaaacatgaattaattaatgcacttagaagcactcctagttagagattatttattttgaaagca |
604 |
Q |
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| T |
28601410 |
ataaataagccatggatatcatcaaacggagtaaggaaaacatgaattaattaatgcacttagaagcactcctagttagagattatttattttgaaagca |
28601311 |
T |
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| Q |
605 |
aagagccaatacattctggtataaggatgcacacacttaaatacattcagtgttgcaactattaggaaaaaggtgaataatactgcatccttgaaggaca |
704 |
Q |
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| T |
28601310 |
aacagccaatacattctggtataaggatgcacacacttaaatacattcagtgttgcaactattaggaaaaaggtgaataatactgcatccttgaaggaca |
28601211 |
T |
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| Q |
705 |
caaacaacgttgtttgtaactcttctgggatatgtgctccattactctctgctcct |
760 |
Q |
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| T |
28601210 |
caaacaacgttgtttgtaactcttctgggatatgtgctccattactctctggtcct |
28601155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 242 - 408
Target Start/End: Complemental strand, 28601716 - 28601549
Alignment:
| Q |
242 |
ttgatattcagatgaagg-atacccgtgcacttggttcaaaagtcttggaatgaatctgatagtagaagggaaactagattgagctatgacaaatgataa |
340 |
Q |
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| T |
28601716 |
ttgatattcagatggagggatacccgtgcacttggttcaaaagtcttggaatgaatctgatagtagaagggaaactagattgagctatgacaaatgataa |
28601617 |
T |
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| Q |
341 |
ttggtgcaacttatttccggatgcgaggttggaatgtctaacgactactacatcagatcattaccctc |
408 |
Q |
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| T |
28601616 |
ttggtgcaacttatttccggatgcgaggttggaatgtctaacgactactacatcagatcattaccctc |
28601549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 123 - 246
Target Start/End: Complemental strand, 28601878 - 28601755
Alignment:
| Q |
123 |
tcatgaaatttgttgagacaacattcaaaaacttctcaattttcttgttatatatagggaatttcaatgatattctctcatttgatgagaagaaaggaag |
222 |
Q |
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| T |
28601878 |
tcatggaatttgttgagacaacattcaaaaacttctcaattttcttgttatatatagggaatttcaatgatattctctcatttgatgagaagaaaggaag |
28601779 |
T |
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| Q |
223 |
agctgaccgcatcaattagttgat |
246 |
Q |
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| T |
28601778 |
agttgatcgcatcaattagttgat |
28601755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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