View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_low_60 (Length: 306)

Name: NF3376_low_60
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_low_60
NF3376_low_60
[»] chr7 (18 HSPs)
chr7 (18-280)||(48078584-48078846)
chr7 (32-92)||(16780767-16780827)
chr7 (32-102)||(101284-101354)
chr7 (32-86)||(35851974-35852028)
chr7 (46-118)||(5815091-5815163)
chr7 (32-86)||(5721703-5721757)
chr7 (32-86)||(25690737-25690791)
chr7 (32-84)||(11329508-11329560)
chr7 (18-85)||(31726653-31726720)
chr7 (32-86)||(11754696-11754750)
chr7 (32-102)||(41195712-41195782)
chr7 (46-85)||(21346400-21346439)
chr7 (32-103)||(22181644-22181715)
chr7 (54-89)||(23018505-23018540)
chr7 (46-101)||(42094325-42094380)
chr7 (27-113)||(38482356-38482440)
chr7 (46-86)||(23937773-23937813)
chr7 (32-84)||(45773219-45773271)
[»] chr3 (11 HSPs)
chr3 (32-86)||(25258079-25258133)
chr3 (34-86)||(37058992-37059044)
chr3 (32-103)||(581047-581118)
chr3 (27-86)||(12767337-12767396)
chr3 (46-86)||(54905139-54905179)
chr3 (70-113)||(24498265-24498308)
chr3 (46-92)||(40413436-40413482)
chr3 (32-86)||(27177341-27177395)
chr3 (139-172)||(41767509-41767542)
chr3 (34-103)||(50670088-50670157)
chr3 (46-86)||(52205046-52205085)
[»] chr8 (15 HSPs)
chr8 (32-102)||(38924419-38924489)
chr8 (25-134)||(34273092-34273201)
chr8 (32-100)||(32729435-32729503)
chr8 (34-86)||(33435410-33435462)
chr8 (32-87)||(8238771-8238826)
chr8 (32-86)||(9030609-9030663)
chr8 (34-113)||(559976-560055)
chr8 (31-86)||(29204623-29204678)
chr8 (32-113)||(10340240-10340321)
chr8 (32-99)||(960064-960131)
chr8 (46-85)||(30370054-30370093)
chr8 (141-170)||(30366524-30366553)
chr8 (33-86)||(33542104-33542156)
chr8 (55-99)||(36110625-36110669)
chr8 (32-76)||(36203388-36203432)
[»] chr4 (11 HSPs)
chr4 (33-102)||(24673011-24673080)
chr4 (32-89)||(25844265-25844322)
chr4 (32-83)||(5961799-5961850)
chr4 (32-92)||(79519-79579)
chr4 (34-86)||(40423324-40423376)
chr4 (30-85)||(2604027-2604082)
chr4 (34-103)||(37397944-37398013)
chr4 (39-102)||(24672711-24672774)
chr4 (32-86)||(9954540-9954594)
chr4 (32-86)||(11548167-11548221)
chr4 (46-99)||(24671052-24671105)
[»] chr2 (13 HSPs)
chr2 (32-113)||(28314647-28314728)
chr2 (46-103)||(15404950-15405007)
chr2 (27-86)||(21488862-21488921)
chr2 (32-86)||(15538955-15539009)
chr2 (32-86)||(8476953-8477007)
chr2 (30-88)||(15605402-15605460)
chr2 (47-92)||(11279976-11280021)
chr2 (32-101)||(14442117-14442186)
chr2 (34-87)||(34557335-34557388)
chr2 (45-85)||(10633408-10633448)
chr2 (47-86)||(4422823-4422862)
chr2 (32-83)||(37172605-37172656)
chr2 (32-86)||(12670787-12670841)
[»] chr1 (16 HSPs)
chr1 (49-105)||(17916170-17916226)
chr1 (32-103)||(25484966-25485037)
chr1 (21-83)||(5760047-5760109)
chr1 (51-89)||(9450235-9450273)
chr1 (46-100)||(32191144-32191198)
chr1 (32-102)||(34123167-34123237)
chr1 (18-82)||(17492734-17492798)
chr1 (32-71)||(768312-768351)
chr1 (32-87)||(1831257-1831312)
chr1 (60-133)||(31847369-31847442)
chr1 (46-86)||(12082185-12082225)
chr1 (139-169)||(35214776-35214806)
chr1 (45-86)||(1245946-1245986)
chr1 (48-100)||(40072989-40073042)
chr1 (34-85)||(8041143-8041195)
chr1 (46-82)||(42826424-42826460)
[»] chr6 (4 HSPs)
chr6 (18-136)||(32820794-32820912)
chr6 (45-123)||(20694575-20694653)
chr6 (46-86)||(22682593-22682633)
chr6 (32-99)||(9993104-9993171)
[»] chr5 (8 HSPs)
chr5 (34-86)||(14105979-14106031)
chr5 (34-86)||(16302635-16302687)
chr5 (34-102)||(23311781-23311849)
chr5 (34-86)||(33270023-33270075)
chr5 (32-103)||(9962909-9962980)
chr5 (27-81)||(7963179-7963233)
chr5 (18-80)||(18398578-18398640)
chr5 (32-113)||(35943520-35943601)
[»] scaffold0223 (1 HSPs)
scaffold0223 (32-83)||(16335-16386)
[»] scaffold0471 (1 HSPs)
scaffold0471 (55-99)||(493-537)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 48078584 - 48078846
Alignment:
Q  18 taacttccactaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaattga 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48078584 taactcccactaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaaatga 48078683  T
Q  118 tgagcggaagttaactctaacaacaattttaaaagggagaagaacaattttcaaatggtaagtcaaaagtgttagtaatgagcttgtaatttaaagttta 217  Q
    |  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||    
T  48078684 ttggcggaagttaactctaacaataattttaaaagggagaagaacaattttcaaatggtaagccaaaagtgttagtaatgggcttgtaatttaaagtcta 48078783  T
Q  218 aaaactgtacttagttattgtatttatgaaaatttctcaagtggcttactattagcacccctc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48078784 aaaactgtacttagttattgtatttatgaaaatttctcaagtggcttactattagcacccctc 48078846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 16780827 - 16780767
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacg 92  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||||||||||| |||||    
T  16780827 acttttaagatcggttcaatcactttttaagtcgattcaaccgatcttaaaagtgtcaacg 16780767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 101354 - 101284
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaact 102  Q
    |||||| |||||| ||||||||||||||||||| | ||||||||||||||||||| || || |||||||||    
T  101354 actttttagatcagttcaatcactttttaagtcaggtcaaccgatcttaaaagtgtcagcgtgagttaact 101284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 35852028 - 35851974
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  35852028 acttttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaagtg 35851974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 5815163 - 5815091
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaattgat 118  Q
    ||||||||||||||||||| | ||||||||||||||||||||||| | ||||| |||   |||||||||||||    
T  5815163 ttcaatcactttttaagtcaggtcaaccgatcttaaaagtgccaatgtgagtttactaccgttgaaaattgat 5815091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 5721703 - 5721757
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||||||||| ||||||| |||||| || ||||||||||||||||||||||||    
T  5721703 acttttaagatcgattcaattacttttcaaatcggttcaaccgatcttaaaagtg 5721757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 25690737 - 25690791
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||| |||||  ||||||||||||||||| |||||||||||||||||||||||    
T  25690737 actttttagatcggttcaatcactttttaagccggttcaaccgatcttaaaagtg 25690791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 11329508 - 11329560
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaag 84  Q
    |||||||||||  |||| ||||||||||||||||||| |||||||||||||||    
T  11329508 acttttaagattgattcgatcactttttaagtcggtttaaccgatcttaaaag 11329560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 31726720 - 31726653
Alignment:
Q  18 taacttccactaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagt 85  Q
    |||||| |||||| ||||||||| ||  ||||||||  ||||||| ||||||||||||||||||||||    
T  31726720 taacttacactaacacttttaagttcggttcaatcatattttaagccggttcaaccgatcttaaaagt 31726653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 11754750 - 11754696
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||||  |||||||||||||||  ||||||||||| ||||||||||||    
T  11754750 acttttaagatcggttcaatcactttttatctcggttcaaccaatcttaaaagtg 11754696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 41195712 - 41195782
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaact 102  Q
    ||||||||| |  ||||||||||||||||||  |||||||| ||||||||||||| ||||  |||||||||    
T  41195712 acttttaaggttgattcaatcactttttaagctggttcaactgatcttaaaagtgtcaacttgagttaact 41195782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 21346400 - 21346439
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagt 85  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  21346400 ttcaatcactttttaagttggttcaaccgaccttaaaagt 21346439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 22181715 - 22181644
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactc 103  Q
    |||||||| ||||||| |||||||||||||| |||||  | ||||| || ||||||||||  ||||||||||    
T  22181715 acttttaaaatcaatttaatcactttttaagacggttgtatcgatcatacaagtgccaacttgagttaactc 22181644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 23018540 - 23018505
Alignment:
Q  54 ctttttaagtcggttcaaccgatcttaaaagtgcca 89  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23018540 ctttttaagtcggtttaaccgatcttaaaagtgcca 23018505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 42094380 - 42094325
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaac 101  Q
    ||||||||||||||||||| | | ||||| ||||||||||| ||||| ||||||||    
T  42094380 ttcaatcactttttaagtcaggttaaccggtcttaaaagtgtcaacgtgagttaac 42094325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 38482440 - 38482356
Alignment:
Q  27 ctaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaa 113  Q
    |||| |||||||||||  ||| |||||||||||||||| ||| ||||| | |||||| || || |||||||||||||||| ||||||    
T  38482440 ctaacacttttaagattgatttaatcactttttaagtcagttaaaccg-ttttaaaa-tgtcagcgagagttaactctagctgaaaa 38482356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 23937773 - 23937813
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||| ||||||||| |||||| |||||||||||||||||    
T  23937773 ttcaattactttttaaatcggtttaaccgatcttaaaagtg 23937813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 45773219 - 45773271
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaag 84  Q
    |||||| |||||  ||||||||||||||| | |||||||||| ||||||||||    
T  45773219 actttttagatcggttcaatcactttttacgccggttcaaccaatcttaaaag 45773271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 25258133 - 25258079
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25258133 acttttaagatcagttcaatcactttttaagtcggttcaaccgatcttaaaagtg 25258079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 37059044 - 37058992
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  37059044 ttttaagatcgattcaatcattttttaagtcgattcaaccgatcttaaaagtg 37058992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 581118 - 581047
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactc 103  Q
    |||||||||| |  |||||| |||||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  581118 acttttaagacccgttcaataactttttaagtctgttcaaccgatcttaaaagtaccagcgtgagttaactc 581047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 12767396 - 12767337
Alignment:
Q  27 ctaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||| ||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||    
T  12767396 ctaacacttttaagatcgtttcaatcactttttaagtcggatcaaccgatcttagaagtg 12767337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 54905139 - 54905179
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  54905139 ttcaatcactttttaagtcggtttaaccgatcttaaaagtg 54905179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 24498265 - 24498308
Alignment:
Q  70 aaccgatcttaaaagtgccaacgagagttaactctagttgaaaa 113  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  24498265 aaccgatcttaaaagtgccaacgagagttaaccctagctgaaaa 24498308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 40413482 - 40413436
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacg 92  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||||    
T  40413482 ttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacg 40413436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 27177341 - 27177395
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||| |||||  |||||||| ||||||||| || |||||||||||||||||||    
T  27177341 actttttagatcggttcaatcattttttaagttgggtcaaccgatcttaaaagtg 27177395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 41767542 - 41767509
Alignment:
Q  139 aacaattttaaaagggagaagaacaattttcaaa 172  Q
    ||||||||||||||||||||| ||||||||||||    
T  41767542 aacaattttaaaagggagaaggacaattttcaaa 41767509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 50670157 - 50670088
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactc 103  Q
    |||||||||| ||||||||| |||||| ||  ||||||||||| ||||||||| || ||  |||||||||    
T  50670157 ttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtgtcagcgtaagttaactc 50670088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 52205085 - 52205046
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  52205085 ttcaatcactttt-aagtcgggtcaaccgatcttaaaagtg 52205046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 38924419 - 38924489
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaact 102  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| || || |||||||||    
T  38924419 acttttaagatcggttcaatcactttttaagtcggttcaactgatcttaaaagtgacagcgtgagttaact 38924489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 34273201 - 34273092
Alignment:
Q  25 cactaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaattgatgagcgg 124  Q
    ||||| |||||||||||||  |||||||||| |||||||||||||||||||| ||||||||| || || ||||||| ||  | |||||| ||  |||| |    
T  34273201 cactagtacttttaagatcggttcaatcactgtttaagtcggttcaaccgattttaaaagtgtcagcgtgagttaattcacgctgaaaaatgccgagcag 34273102  T
Q  125 aagttaactc 134  Q
    ||||||||||    
T  34273101 aagttaactc 34273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 32729435 - 32729503
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaa 100  Q
    ||||||||||||| |||||| | |||||||||||||||||||||||||||||||| || ||| ||||||    
T  32729435 acttttaagatcagttcaattattttttaagtcggttcaaccgatcttaaaagtgtcagcgacagttaa 32729503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 33435462 - 33435410
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  33435462 ttttaagatcagtttaattactttttaagtcggttcaaccgatcttaaaagtg 33435410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 8238771 - 8238826
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgc 87  Q
    |||||| |||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  8238771 actttttagatcagttcaatcacttttttagtcggatcaaccgatcttaaaagtgc 8238826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 9030609 - 9030663
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||||||||| ||||||||||||||||| |||||||||  |||||||||||||    
T  9030609 acttttaagatcgattcaatcactttttaaatcggttcaattgatcttaaaagtg 9030663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 559976 - 560055
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaa 113  Q
    |||||||| | ||||||| | ||||||||| |||||||||||| |||||| ||||| || ||||||||||  ||||||||    
T  559976 ttttaagaccgattcaattattttttaagttggttcaaccgattttaaaattgccagcgtgagttaactcacgttgaaaa 560055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 29204623 - 29204678
Alignment:
Q  31 tacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||| |||  ||||||||||||||||||||| ||||| |||||||||||||    
T  29204623 tacttttaaaatcggttcaatcactttttaagtcggatcaactgatcttaaaagtg 29204678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 10340240 - 10340321
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaa 113  Q
    |||||| ||||| ||||||||| ||||||||| || ||  ||||||||||||||| || || ||||||||||  ||||||||    
T  10340240 actttttagatcgattcaatcattttttaagttgggtcggccgatcttaaaagtgtcagcgtgagttaactcacgttgaaaa 10340321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 960131 - 960064
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagtta 99  Q
    |||||||| ||||||||||||||||||||||  | |||||| ||| ||| ||||| ||||| ||||||    
T  960131 acttttaaaatcaattcaatcactttttaagctgattcaactgattttataagtgtcaacgtgagtta 960064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 30370093 - 30370054
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagt 85  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  30370093 ttcaatcactttttaagttggttcaaccgattttaaaagt 30370054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 30366553 - 30366524
Alignment:
Q  141 caattttaaaagggagaagaacaattttca 170  Q
    ||||||||||||||||||||||||||||||    
T  30366553 caattttaaaagggagaagaacaattttca 30366524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 33542156 - 33542104
Alignment:
Q  33 cttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||||||| | |||| ||| ||||||||||| ||||||||||||||||||||    
T  33542156 cttttaagattagttcagtcattttttaagtcg-ttcaaccgatcttaaaagtg 33542104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 36110669 - 36110625
Alignment:
Q  55 tttttaagtcggttcaaccgatcttaaaagtgccaacgagagtta 99  Q
    |||||||||||||||||| ||||||||||||| || ||| |||||    
T  36110669 tttttaagtcggttcaactgatcttaaaagtgtcagcgatagtta 36110625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 36203432 - 36203388
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgat 76  Q
    |||||||||||  | ||||||||||| ||||||||||||||||||    
T  36203432 acttttaagattgactcaatcactttataagtcggttcaaccgat 36203388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 24673080 - 24673011
Alignment:
Q  33 cttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaact 102  Q
    ||||| |||||| ||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||    
T  24673080 ctttttagatcagttcaatcactttttatgtcgggtcaaccaatcttaaaagtgccaacgtgagttaact 24673011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 25844322 - 25844265
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgcca 89  Q
    |||||||||||  |||||||| ||||||||| ||||||||||||||||||||||||||    
T  25844322 acttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaaagtgcca 25844265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 5961799 - 5961850
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaa 83  Q
    ||||||||||||| |||||||||||||||||| || ||||||||||||||||    
T  5961799 acttttaagatcagttcaatcactttttaagttggctcaaccgatcttaaaa 5961850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 79579 - 79519
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacg 92  Q
    |||||| |||||  ||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  79579 actttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacg 79519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 40423376 - 40423324
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||  |||||||||||||||||||||||||||  ||||||||||||    
T  40423376 ttttaagatcggttcaatcactttttaagtcggttcaacaaatcttaaaagtg 40423324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 2604027 - 2604082
Alignment:
Q  30 atacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagt 85  Q
    |||||||||| ||| ||||||||| ||||||| |||||||||| ||||||||||||    
T  2604027 atacttttaaaatcgattcaatcattttttaaatcggttcaactgatcttaaaagt 2604082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 37398013 - 37397944
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactc 103  Q
    ||||||||||  ||||||||||||||||||| |||||||| ||||||||  | ||| || ||||||||||    
T  37398013 ttttaagatcggttcaatcactttttaagtcagttcaaccaatcttaaacattccagcgtgagttaactc 37397944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 24672774 - 24672711
Alignment:
Q  39 agatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaact 102  Q
    ||||| |||||||||||||||||||||| | |||||||   ||||||| ||||| |||||||||    
T  24672774 agatcgattcaatcactttttaagtcggataaaccgataaaaaaagtgtcaacgtgagttaact 24672711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 9954540 - 9954594
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||| ||||||||||||| | ||||||||| || |||| ||||||||||||||    
T  9954540 actttttagatcaattcaattattttttaagttgggtcaatcgatcttaaaagtg 9954594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 11548221 - 11548167
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||||  |||| || |||||||||||||||| |||||| |||||||||    
T  11548221 acttttaagatcggttcattcgctttttaagtcggttcgaccgatgttaaaagtg 11548167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 24671105 - 24671052
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagtta 99  Q
    |||||||||||||| ||||||||||||| |||| |||||| ||| || ||||||    
T  24671105 ttcaatcacttttttagtcggttcaaccaatctaaaaagtaccagcgtgagtta 24671052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 28314728 - 28314647
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaa 113  Q
    ||||||||||||  |||||||||||||||| | |||| ||||||||||||||||| || |  ||||||||||||||||||||    
T  28314728 acttttaagatcggttcaatcactttttaaattggttgaaccgatcttaaaagtgtcagcaggagttaactctagttgaaaa 28314647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 15404950 - 15405007
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactc 103  Q
    ||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||    
T  15404950 ttcaatcactttttaagtcgggtcaaccgattttaaaagtgtcaacgtgagttaactc 15405007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 21488862 - 21488921
Alignment:
Q  27 ctaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||| ||||||||||||  |||||||| |||||||||| |||||||||||||||||||||    
T  21488862 ctaacacttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaagtg 21488921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 15538955 - 15539009
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||||  |||||| ||||||||||||||||||| ||||||||||||||    
T  15538955 acttttaagatcggttcaattactttttaagtcggttcaatcgatcttaaaagtg 15539009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 8476953 - 8477007
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||||||||||||||||| ||||| ||||| ||||||||  ||||||||||||    
T  8476953 acttttaagatcaattcaattactttctaagtgggttcaactaatcttaaaagtg 8477007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 15605460 - 15605402
Alignment:
Q  30 atacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgcc 88  Q
    |||||| |||||||| ||||||||||| || ||||| ||||||||||||||||| ||||    
T  15605460 atacttataagatcagttcaatcacttcttcagtcgattcaaccgatcttaaaaatgcc 15605402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 11280021 - 11279976
Alignment:
Q  47 tcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacg 92  Q
    |||||||||||||||||||||||||||||| |||||| || |||||    
T  11280021 tcaatcactttttaagtcggttcaaccgattttaaaattgtcaacg 11279976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 14442117 - 14442186
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaac 101  Q
    ||||||||||||| | ||||||||||||||| || |||||| ||||||||| |||| | || ||||||||    
T  14442117 acttttaagatcagtacaatcactttttaagccgattcaactgatcttaaaggtgctagcgtgagttaac 14442186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 34557388 - 34557335
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgc 87  Q
    ||||||||||  |||||||| ||||||| ||||||||| |||||||||||||||    
T  34557388 ttttaagatctgttcaatcattttttaaatcggttcaatcgatcttaaaagtgc 34557335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 10633408 - 10633448
Alignment:
Q  45 attcaatcactttttaagtcggttcaaccgatcttaaaagt 85  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  10633408 attcaatcaatttttaagtcgtttcaaccgatcttaaaagt 10633448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 4422862 - 4422823
Alignment:
Q  47 tcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  4422862 tcaatcactttttaagtcgaatcaaccgatcttaaaagtg 4422823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 37172656 - 37172605
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaa 83  Q
    |||||||| |||  ||||||||||||||||||| |||||||| |||||||||    
T  37172656 acttttaacatcggttcaatcactttttaagtcagttcaaccaatcttaaaa 37172605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 12670787 - 12670841
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||||  |||||||| |||||||| ||  |||||||||||||||||||    
T  12670787 acttttaagatcggttcaatcaatttttaagccgactcaaccgatcttaaaagtg 12670841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 17916226 - 17916170
Alignment:
Q  49 aatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactcta 105  Q
    ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||    
T  17916226 aatcactttttaagtcggttcaatcgatcttaaaagtgtcagcgagagttaactcta 17916170  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 25484966 - 25485037
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactc 103  Q
    ||||||||||||||||||||||||||||||| |  ||||| |||||||||||||| || || ||||||||||    
T  25484966 acttttaagatcaattcaatcactttttaagccaattcaaacgatcttaaaagtggcagcgtgagttaactc 25485037  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 5760047 - 5760109
Alignment:
Q  21 cttccactaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaa 83  Q
    ||||| |||| ||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  5760047 cttccgctaaaacttttaagatcgcttcaatcactttttaagtcgcttcaaccgatcttaaaa 5760109  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 9450235 - 9450273
Alignment:
Q  51 tcactttttaagtcggttcaaccgatcttaaaagtgcca 89  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9450235 tcactttttaagtcggttcaaccgatcttaaaagtgcca 9450273  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 32191198 - 32191144
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaa 100  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| || |||||||    
T  32191198 ttcaatcattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaa 32191144  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 34123237 - 34123167
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaact 102  Q
    |||||||| ||||| ||||||||||||||||  |||||||||||| ||||||||| || || |||||||||    
T  34123237 acttttaatatcaactcaatcactttttaagctggttcaaccgattttaaaagtgtcagcgtgagttaact 34123167  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 17492798 - 17492734
Alignment:
Q  18 taacttccactaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaa 82  Q
    ||||| ||||| | |||||||| ||| ||||||||||||||||||||| |||||| |||||||||    
T  17492798 taactaccactgacacttttaatatcgattcaatcactttttaagtcgattcaactgatcttaaa 17492734  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 768351 - 768312
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaa 71  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  768351 acttttaagatcagttcaatcactttttaagtcggttcaa 768312  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 1831312 - 1831257
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgc 87  Q
    ||||||||||||  || |||| ||||||||||||||||||| ||||||||||||||    
T  1831312 acttttaagatcggtttaatcgctttttaagtcggttcaactgatcttaaaagtgc 1831257  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 31847442 - 31847369
Alignment:
Q  60 aagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaattgatgagcggaagttaact 133  Q
    |||||||||| |||||||||||||||| || |||||||||||||  | |||||| ||  ||||| |||||||||    
T  31847442 aagtcggttcgaccgatcttaaaagtgtcagcgagagttaactcacgctgaaaaatgtcgagcgtaagttaact 31847369  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 12082185 - 12082225
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  12082185 ttcaatcactttgtaagtcgggtcaaccgatcttaaaagtg 12082225  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 169
Target Start/End: Original strand, 35214776 - 35214806
Alignment:
Q  139 aacaattttaaaagggagaagaacaattttc 169  Q
    |||||||||||||||||||||||||||||||    
T  35214776 aacaattttaaaagggagaagaacaattttc 35214806  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 1245986 - 1245946
Alignment:
Q  45 attcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  1245986 attcaatcactttttaa-tcagttcaaccgatcttaaaagtg 1245946  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 40072989 - 40073042
Alignment:
Q  48 caatcactttttaagtcggttcaaccgatcttaaaagtg-ccaacgagagttaa 100  Q
    |||||||| |||||||||||| || |||||||||||||| ||||||| ||||||    
T  40072989 caatcactctttaagtcggtttaatcgatcttaaaagtgtccaacgatagttaa 40073042  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 8041143 - 8041195
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccg-atcttaaaagt 85  Q
    ||||||||||  |||||||| ||||||||| |||||||||| |||||||||||    
T  8041143 ttttaagatcggttcaatcaatttttaagttggttcaaccgaatcttaaaagt 8041195  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 42826460 - 42826424
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaa 82  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  42826460 ttcaatcactttttaagtcggtttaaccaatcttaaa 42826424  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 32820794 - 32820912
Alignment:
Q  18 taacttccactaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaattga 117  Q
    ||||| ||||| | ||| ||||||||  ||||  |||||||||||| |||||||| ||| ||||||||| || | || ||||||||||  |||||| ||     
T  32820794 taactcccactgacactattaagatcggttcagacactttttaagttggttcaactgatgttaaaagtgacagcaagtgttaactctaactgaaaaatgt 32820893  T
Q  118 tgagcggaagttaactcta 136  Q
     ||||||||||||||||||    
T  32820894 cgagcggaagttaactcta 32820912  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 20694653 - 20694575
Alignment:
Q  45 attcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaattgatgagcg 123  Q
    ||||||||||||||||||| |  |||||| ||||||||||||||| || ||||||||| | | |||||| || ||||||    
T  20694653 attcaatcactttttaagttgagtcaaccaatcttaaaagtgccaccgtgagttaactatcgctgaaaaatgttgagcg 20694575  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 22682593 - 22682633
Alignment:
Q  46 ttcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  22682593 ttcaatcattttttaagttggttcaaccgatcttaaaagtg 22682633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 9993171 - 9993104
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagtta 99  Q
    |||||||||||   ||||||||||||||||||| || |||| |||||||||| ||||| ||| |||||    
T  9993171 acttttaagatatgttcaatcactttttaagtccgtccaacggatcttaaaaatgccagcgacagtta 9993104  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 14106031 - 14105979
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    ||||||||||  |||||||||||||||||| ||||  ||||||||||||||||    
T  14106031 ttttaagatcggttcaatcactttttaagttggtttgaccgatcttaaaagtg 14105979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 16302635 - 16302687
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||| |||| ||||||||  ||||||||||||| |||||||||||||||||    
T  16302635 ttttaaaatcagttcaatcagattttaagtcggtttaaccgatcttaaaagtg 16302687  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 23311781 - 23311849
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaact 102  Q
    ||||||||||  || ||| | |||||||||| |||||||| |||||||||||| ||||| |||||||||    
T  23311781 ttttaagatcggttaaattattttttaagtcagttcaaccaatcttaaaagtgtcaacgtgagttaact 23311849  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 33270023 - 33270075
Alignment:
Q  34 ttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtg 86  Q
    |||||| ||| ||| |||||| |||||||||||||||||| ||||||||||||    
T  33270023 ttttaacatcgatttaatcacattttaagtcggttcaaccaatcttaaaagtg 33270075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 9962980 - 9962909
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactc 103  Q
    |||||||||||  |||||||||||||| ||   ||||||||||||||||||| ||| | || ||||||||||    
T  9962980 acttttaagattgattcaatcacttttcaatctggttcaaccgatcttaaaaatgctagcgtgagttaactc 9962909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 7963233 - 7963179
Alignment:
Q  27 ctaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaa 81  Q
    |||| |||||||| ||| |||||||||| |||| |||||| ||||||||||||||    
T  7963233 ctaacacttttaaaatcgattcaatcacattttcagtcgggtcaaccgatcttaa 7963179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 18398640 - 18398578
Alignment:
Q  18 taacttccactaatacttttaagatcaattcaatcactttttaagtcggttcaaccgatctta 80  Q
    |||||| |||| | ||||||||||||  |||| |||||||||||  |||||||||||||||||    
T  18398640 taacttacactgacacttttaagatcggttcattcactttttaaaccggttcaaccgatctta 18398578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 35943601 - 35943520
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaa 113  Q
    ||||||||||||  |||||| | |||||||||| ||||||||||| |||| | || || |  |||||||||| |||||||||    
T  35943601 acttttaagatcggttcaattattttttaagtcagttcaaccgattttaagaatgtcagcatgagttaactcaagttgaaaa 35943520  T

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Target: scaffold0223 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 16335 - 16386
Alignment:
Q  32 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaa 83  Q
    |||||||||| |  |||||| ||||||||| |||||||||||||||||||||    
T  16335 acttttaagaccggttcaattactttttaaatcggttcaaccgatcttaaaa 16386  T

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Target: scaffold0471 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 537 - 493
Alignment:
Q  55 tttttaagtcggttcaaccgatcttaaaagtgccaacgagagtta 99  Q
    |||||||||||||||||| ||||||||||||| || ||| |||||    
T  537 tttttaagtcggttcaactgatcttaaaagtgtcagcgatagtta 493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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