View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_61 (Length: 305)
Name: NF3376_low_61
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 6133943 - 6134237
Alignment:
| Q |
1 |
ttatggttcattgtatgatgatgttgggtcaagtgtacatagggtttatttagataaatatagattttccaagcctttaaagtttatgctatcaaatttt |
100 |
Q |
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| T |
6133943 |
ttatggttcattgtatgatgatgttgggtcaaatgtacatagggtttatttagataaatatagattttccaagcctttaaagtttatgctatcaaatttt |
6134042 |
T |
|
| Q |
101 |
gaatctattgctagttttaatgttaatgatgatgaaaatgaggtttttgaattgtggaagatagtgaatgataggcttgcattgccacttttaatggatc |
200 |
Q |
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| T |
6134043 |
gaatctattgctagttttaatgttaatgatgatgaaaatgaggtttttgaattgtggaagatagtgaatgataggcttgcattgccacttttaatggatc |
6134142 |
T |
|
| Q |
201 |
tttgtgataaagctggattgaatcttccaccatgttttatgagcctcccaatggaacttaagctcttaatatttgagtatcttcctggtgatgat |
295 |
Q |
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| T |
6134143 |
tttgtgataaagctggattgaatcttccaccatgttttatgagcctcccaatggaacttaagctcttaatatttgagtatcttcctggtgatgat |
6134237 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 20600123 - 20600420
Alignment:
| Q |
1 |
ttatggttcattgtatgatgatgttgggtcaagtgtacatagggtttatttagataaatatagattttccaagcctttaaagtttatgcta---tcaaat |
97 |
Q |
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| T |
20600123 |
ttatggttcattgtatgatgatgttgggtcaagtgtacatatggtttatttagataaatgtagatttgccaagcctttagagtttctgctgatgtcaaat |
20600222 |
T |
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| Q |
98 |
tttgaatctattgctagttttaatgttaatgatgatgaaaatgaggtttttgaattgtggaagatagtgaatgataggcttgcattgccacttttaatgg |
197 |
Q |
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| T |
20600223 |
tctgaatctaatgcttgtgttaatgttgatggtgataaagatgaagttttggaattgtggaagatagtgaacgataggcttgcatttccacttttaattg |
20600322 |
T |
|
| Q |
198 |
atctttgtgataaagctggattgaatcttccaccatgttttatgagcctcccaatggaacttaagctcttaatatttgagtatcttcctggtgatgat |
295 |
Q |
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| T |
20600323 |
atctttgtgataaagctggattgattcttccaccttgttttatgagcctcccaatggaacttaagctcgtaatatttgagtatcttcctggtgatgat |
20600420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 47944754 - 47944467
Alignment:
| Q |
2 |
tatggttcattgtatgatgatgttgggtcaagtgtacatagggtttatttagataaatatagattttccaagcctttaaagtttatgctatcaaattttg |
101 |
Q |
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||||||||||||| |||||||| ||||||||| || |||||||||||||||||||||| ||||||| | ||||||||| | || ||||| ||||| || |
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| T |
47944754 |
tatggttcattgtgtgatgatgctgggtcaagggtgcatagggtttatttagataaatctagatttgctaagcctttagaattgatgctggaaaattctg |
47944655 |
T |
|
| Q |
102 |
aatctattgctagttttaatgttaatgatgatgaaaatgaggtttttgaattgtggaagatagtgaatgataggcttgcattgccacttttaatggatct |
201 |
Q |
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||| || || || |||||| | ||| || | || | |||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||| |
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| T |
47944654 |
aatttaatggtaattttaacg------atgttggagataaagtttttgaattgtggaagatagtgaaagatgggcttgcattgccactattaattgatct |
47944561 |
T |
|
| Q |
202 |
ttgtgataaagctggattgaatcttccaccatgttttatgagcctcccaatggaacttaagctcttaatatttgagtatcttcctggtgatgat |
295 |
Q |
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|||||||||||||||||| | |||||||| ||||||||| | || || ||||| |||||||| | ||||||||||||||||| ||||||||| |
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| T |
47944560 |
ttgtgataaagctggattagaacttccaccgtgttttatgcgtcttccgatggagcttaagctgctgatatttgagtatcttcccggtgatgat |
47944467 |
T |
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