View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_64 (Length: 300)
Name: NF3376_low_64
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_64 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 44014400 - 44014699
Alignment:
| Q |
1 |
aatctagaagtatgttaaggcacttaacagctctgtttagaattgatgggacacaatcatgatgaagataagctaaaccttgagctgaaccaacagcgat |
100 |
Q |
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| T |
44014400 |
aatctagaagtatgttattgcacttaacatctctgtgtagaattgatgggacacaatcatgatgaagataagctaaaccttgagctgaaccaacagcgat |
44014499 |
T |
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| Q |
101 |
cttgtatctagtttcccagtctaagtttctattcccttccaaaagttgtctaagattaccattttggataaagttatagagaagtagcttaacactccca |
200 |
Q |
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| T |
44014500 |
cttgtatctagtttcccagtctaagtttctattcccttccaaaagttgtctaagattaccattttggataaagttatagagaagtagcttaacactccca |
44014599 |
T |
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| Q |
201 |
ttagaacaataacctatgagcctcacaatgttcctatgccgaatgtagccgagagtctgaatctcaacagcaaaagaatcggacatttcatctccattgc |
300 |
Q |
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| T |
44014600 |
ttagaacaataacctatgagcctcacaatgttcctatgccgaatgtagccgagaatctgaatctcagcagcaaaagaatcgaccatttcatctcctttgc |
44014699 |
T |
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Target: scaffold0131 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 12693 - 12748
Alignment:
| Q |
175 |
tatagagaagtagcttaacactcccattagaacaataacctatgagcctcacaatg |
230 |
Q |
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| T |
12693 |
tatagagaagaagcttaatattcccattagaacaataacttatgagcgtcgcaatg |
12748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 28754674 - 28754626
Alignment:
| Q |
173 |
gttatagagaagtagcttaacactcccattagaacaataacctatgagc |
221 |
Q |
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| T |
28754674 |
gttatagagaagaagcttaatattcccattagaagaataacttatgagc |
28754626 |
T |
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