View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_65 (Length: 299)
Name: NF3376_low_65
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 26823823 - 26823553
Alignment:
| Q |
17 |
aaaatggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagat |
116 |
Q |
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| T |
26823823 |
aaaatggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgagttcatatggaagaatatcagagaacctttgatagtgccaatgttgagat |
26823724 |
T |
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| Q |
117 |
ggacagtgtatttgtgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacacc |
216 |
Q |
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| T |
26823723 |
ggacagtgtatttgtgcttaggtttgtcattgataatgttggttgagaaagtttacatggcaattgtcatttgttatgtgaagttgtttaaaagaacacc |
26823624 |
T |
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| Q |
217 |
agagaaacgttataaatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttc |
287 |
Q |
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| T |
26823623 |
agagaaacgttataaatttgaggctattgaggatgatgttgagttgggaaactcctattatcccatggttc |
26823553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 26799730 - 26799461
Alignment:
| Q |
18 |
aaatggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatg |
117 |
Q |
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| T |
26799730 |
aaatggaggcatttaaagtagcaagtgaaggagttggtatgcaacttgagttcatatggaagaatatcagagaacctttgatagtgccaatgttgagatg |
26799631 |
T |
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| Q |
118 |
gacagtgtatttgtgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacacca |
217 |
Q |
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| T |
26799630 |
gacagtgtatttgtgcttaggtttgtcattgataatgttggttgaaaaagtatacatggcaattgtcatttgttatgtgaagttgtttaagagaacacca |
26799531 |
T |
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| Q |
218 |
gagaaacgttataaatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttc |
287 |
Q |
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| T |
26799530 |
gagaagtgttataaatttaaggctattgaggatgatgttgagttgggaaactctaattatcccatggttc |
26799461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 26786952 - 26786696
Alignment:
| Q |
20 |
atggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatgga |
119 |
Q |
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| T |
26786952 |
atggaggtgtttcaagtagctagtgaaggagttggtatgcaacttgcgtttatttggaggaaaataagagaacctttgatcgtgccaatgctgagagctg |
26786853 |
T |
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| Q |
120 |
cagtgtatttgtgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccaga |
219 |
Q |
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| T |
26786852 |
cagtgtttatctgcctaagcatgtcattgatgatattggttgagatagtttacatgggaattgtgatttgtttagtgaagttgtttaaaagaacacctga |
26786753 |
T |
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| Q |
220 |
gaaacgttataaatttgaggctattgaggatgatgctgagttgggaaactccaatta |
276 |
Q |
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| T |
26786752 |
gaaacgttataaatgggagactattaaggatgatgttgagttggaaaactctaatta |
26786696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 131 - 287
Target Start/End: Complemental strand, 26833630 - 26833474
Alignment:
| Q |
131 |
tgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttata |
230 |
Q |
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| T |
26833630 |
tgcctaggcatgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccagagaaacgttata |
26833531 |
T |
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| Q |
231 |
aatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttc |
287 |
Q |
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| T |
26833530 |
aatgggagactattaaggatgatgttgagttgggaaactctaattaccctatggttc |
26833474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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