View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_68 (Length: 293)
Name: NF3376_low_68
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 21686607 - 21686898
Alignment:
| Q |
1 |
ttgttttggattccatgtcaatacataattttctttaaaaatttatggttgtctctaaaattatcatctagatagttatttaaataacacgtctctttac |
100 |
Q |
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| T |
21686607 |
ttgttttggattccgtgtcaatacatacttttctttaaaaatttatgattgtatcaaaagttatcatctagataattattcaaataacacatctctttac |
21686706 |
T |
|
| Q |
101 |
attaataggaaactattgttttgcatttttacatgtcttgttagttatattcatcgatttgttattacaaaatgattctataaatatcatttatttgtca |
200 |
Q |
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| T |
21686707 |
attaataggtaactattgttttacatttttacatttcttgttagttatattcatcgatttattgttacaaaatgattctataaatatcatttatgagtca |
21686806 |
T |
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| Q |
201 |
aaagtgattgaatcaccacaattatactgaaaagtgtaatcaacaatagtaggagaagagaaaccataccacgtgcatattcttcgacatcc |
292 |
Q |
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| T |
21686807 |
aaagtgattgaatcaccacaattataccgaaaagtgtaataaaaaatagtaggagaagagaaaccataccacgtgcataatgttcaacatcc |
21686898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 39654928 - 39655002
Alignment:
| Q |
16 |
tgtcaatacataattttctttaaaaatttatggttgtctctaaaattatcatctagatagttatttaaataacac |
90 |
Q |
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| T |
39654928 |
tgtcaatacctcattttctttgtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacac |
39655002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 55540827 - 55540773
Alignment:
| Q |
11 |
ttccatgtcaatacataattttctttaaaaatttatggttgtctctaaaattatca |
66 |
Q |
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| T |
55540827 |
ttccatgtcaatacata-ttttctatataaatttatggttgtctcaaaaattatca |
55540773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 12595612 - 12595515
Alignment:
| Q |
1 |
ttgttttggattccatgtcaatacataattttctttaaaaatttatggttgtctctaaaattatcatctagatagttatttaaataacacgtctcttt |
98 |
Q |
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| T |
12595612 |
ttgttttggttttcgtgtcaatacctactttcctttataaatttatggttgtcccaaaaattgtcatcaaaatggttgttcaaataacacatctcttt |
12595515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 34995414 - 34995475
Alignment:
| Q |
5 |
tttggattccatgtcaatacataattttctttaaaaatttatggttgtctctaaaattatca |
66 |
Q |
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| T |
34995414 |
tttggtttccgtgtcaatacctatttttctttataaatttatggttgtccctaaagttatca |
34995475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 18767953 - 18768002
Alignment:
| Q |
5 |
tttggattccatgtcaatacataattttctttaaaaatttatggttgtct |
54 |
Q |
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| T |
18767953 |
tttggttttcatgtcaatacctacttttctttataaatttatggttgtct |
18768002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 17264047 - 17264006
Alignment:
| Q |
11 |
ttccatgtcaatacataattttctttaaaaatttatggttgt |
52 |
Q |
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| T |
17264047 |
ttccatgtcaatacataattttctttacaaatttatgattgt |
17264006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 5054126 - 5054065
Alignment:
| Q |
29 |
ttttctttaaaaatttatggttgtctctaaaattatcatctagatagttatttaaataacac |
90 |
Q |
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|||| |||| ||||||||||||||||| ||| || |||| || |||||| |||||||||||| |
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|
| T |
5054126 |
ttttttttataaatttatggttgtctcaaaagttgtcatataaatagttttttaaataacac |
5054065 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 8056815 - 8056870
Alignment:
| Q |
11 |
ttccatgtcaatacataattttctttaaaaatttatggttgtctctaaaattatca |
66 |
Q |
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| T |
8056815 |
ttccttgtcaatatataattttctttataaatttatggttatccataaaattatca |
8056870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 46574346 - 46574400
Alignment:
| Q |
1 |
ttgttttggattccatgtcaatacataattttctttaaaaatttatggttgtctc |
55 |
Q |
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||||||||| |||| ||||||||| || |||||||| ||||||||||||||||| |
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| T |
46574346 |
ttgttttggtttccgtgtcaatacctacttttctttctaaatttatggttgtctc |
46574400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 21433378 - 21433330
Alignment:
| Q |
5 |
tttggattccatgtcaatacataattttctttaaaaatttatggttgtc |
53 |
Q |
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| T |
21433378 |
tttggtttccatgtcgatacctacttttctttacaaatttatggttgtc |
21433330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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