View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_7 (Length: 684)
Name: NF3376_low_7
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 4e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 15 - 459
Target Start/End: Complemental strand, 22488600 - 22488158
Alignment:
| Q |
15 |
aaaagggaccacaaacaccaaatttgaagacccaaaacaagcaaagcataaattgactgatgaatattgatcgttagtgaaatgagtgattggtgaggtg |
114 |
Q |
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| T |
22488600 |
aaaagggaccacaaacaccaaatttgaagacccaaaacaagcaaagcataaattgactgatgaatattgatcgttagtgaaatgagtgattggtgaggtg |
22488501 |
T |
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| Q |
115 |
tcctggatacttaacaaccgaatcttcaattttgtctttcaaattataacactatcaatttcatctgagttgaaaactaatgaaacttaaaaataannnn |
214 |
Q |
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| T |
22488500 |
tcctgcatagttaaccaccgaatcttcaattttgtctttcaaattataacactatcaattt-----------gaaactaatgaaacttaaaaataatttt |
22488412 |
T |
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| Q |
215 |
nnnnnnnnnnnnnnnnaactaaacgtaattaca-ttctgtgactcataagagacactgttaagtatctctatgatctagacactcaatgtctcctatgag |
313 |
Q |
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| T |
22488411 |
tgattttgatttttttaactaaccgtaattacatttttttgactcataataaacactcttaagtatctttaggacttagacacttaagatctgttatgag |
22488312 |
T |
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| Q |
314 |
attaatact------agcaacacg-catctttttttgacgcaatgacatcnnnnnnnnnagagttaaattgcctc-ctaaaatacaacttgagaactcga |
405 |
Q |
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| T |
22488311 |
attaatacttgagtcagcaacatgacatctttttttgacgcaatgacatcttttttcgttaagttgaattgcctctcgaatagacaacttgagaattcga |
22488212 |
T |
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| Q |
406 |
actcaagttcccttcttcaaaagaaagagtcattttaccaactctcaatatcaa |
459 |
Q |
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| T |
22488211 |
actcaagttccttttttcaaaagaaagagtcattttaccaactctcaagatcaa |
22488158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 497 - 647
Target Start/End: Complemental strand, 22488006 - 22487853
Alignment:
| Q |
497 |
tatatggttgaagattttctaagttcaaatagtacaatttattttacaaactaata--aatcacatgtttgaaa-tgacaccgagttaaaatgaaattgt |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
22488006 |
tatatggttgaagattttctaagttcaaatagtacaatttattttacaaactaatataaatcacatgtttgaaaatgacatcgagttaaaatgaaattgt |
22487907 |
T |
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| Q |
594 |
gatgccacaacaattttattgaaactaaaaagtgagattttactaaaattgtat |
647 |
Q |
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| T |
22487906 |
gatgccacaataattttattgaaactaaaaaatgtgattttacaaaaactgtat |
22487853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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