View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_72 (Length: 290)
Name: NF3376_low_72
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 3086174 - 3085904
Alignment:
| Q |
1 |
ttgacaaaatgatccagtgacatcacctctacaatcatagagaccatagacagcatcaattgtgttctctcctatgcttgtgtgattatatcctttactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3086174 |
ttgacaaaatgatccagtgacatcacctctacaatcatagagaccatagacagcatcaattgtgttctctcctatgcttgtatgattatatcctttactt |
3086075 |
T |
|
| Q |
101 |
acaatagcatcagaggaaagaagtgagaggactttattaaggttagatttgtatgtagctgtaagagattgttcggttgagttgtgacaatcatcaccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3086074 |
acaatagcatcagaggaaagaagtgagaggactttattaaggttagatttgtatgtagctgtaagagattgttcggttgagttgtgacaatcatcaccta |
3085975 |
T |
|
| Q |
201 |
cataatttggtgattgtgcaattgattttgtgaaaagggtaatgatgctaataaatctaatgatggaaatg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
3085974 |
cataatttggtgattgtgcaattgattttgtgaaaagactaatgatgctaataaatctaatgatgaaaatg |
3085904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 3075633 - 3075363
Alignment:
| Q |
1 |
ttgacaaaatgatccagtgacatcacctctacaatcatagagaccatagacagcatcaattgtgttctctcctatgcttgtgtgattatatcctttactt |
100 |
Q |
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||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| ||| || || ||||| ||||| |||||||||||||||||| |
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| T |
3075633 |
ttgacaaaatgatcctgttacatcacctctacaatcatacagaccatagacagcatcaactgtattgtcacctatacttgtatgattatatcctttactt |
3075534 |
T |
|
| Q |
101 |
acaatagcatcagaggaaagaagtgagaggactttattaaggttagatttgtatgtagctgtaagagattgttcggttgagttgtgacaatcatcaccta |
200 |
Q |
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| T |
3075533 |
acaatagcatcagatgagagcaatgaaaggactttattaaggttggatttgtatgtagttgtaagtgatttttcagttgaattgtgacaatcatcaccta |
3075434 |
T |
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| Q |
201 |
cataatttggtgattgtgcaattgattttgtgaaaagggtaatgatgctaataaatctaatgatggaaatg |
271 |
Q |
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|||||||||| |||||||||| |||||||||||||||||| |||||||||| |||||||| |||||||||| |
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| T |
3075433 |
cataatttggagattgtgcaagtgattttgtgaaaagggtgatgatgctaagaaatctaaggatggaaatg |
3075363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 4555538 - 4555746
Alignment:
| Q |
1 |
ttgacaaaatgatccagtgacatcacctctacaatcatagagaccatagacagcatcaattgtgttctctcctatgcttgtgtgattatatcctttactt |
100 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
4555538 |
ttgacaaaatgatcctgtgacatcacctctacagtcatagagtccatagacagcatcaactgtgttgtctcctatgcttgtgtgattatatcctttactt |
4555637 |
T |
|
| Q |
101 |
acaatagcatcagaggaaagaagtgagaggactttattaaggttagatttgtatgtagctgtaagagattgttcggttgagttgtgacaatcatcaccta |
200 |
Q |
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|||||| ||||| ||| || ||| |||| |||||||||||| ||||||||||||| |||||| |||||||| |||| | ||||||||||||||||| |
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| T |
4555638 |
acaataccatcaaaggtgagcgatgaaaggaatttattaaggttggatttgtatgtagttgtaagtgattgttctcttgaatcgtgacaatcatcaccta |
4555737 |
T |
|
| Q |
201 |
cataatttg |
209 |
Q |
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||||||||| |
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| T |
4555738 |
cataatttg |
4555746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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