View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3376_low_76 (Length: 276)
Name: NF3376_low_76
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_76 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 31882597 - 31882350
Alignment:
| Q |
11 |
cacagatgacttcccaacatttggatatccaacaaaaccaacagatattgcttgtttatcgcttttcaatcttgcaaattgtctcaaaaccgatagaagc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31882597 |
cacagatgacttcccaacatttggatatccaacaaaaccaacagatattgcttgtttatcgcttttcaatcttgcaaattgtctcaaaatcgatagaagc |
31882498 |
T |
|
| Q |
111 |
gaaccctttccaaaagacttattaatgcttgcatggaatgctagagttggatattcttttgacaaaaccctaagccatcctttagttgcccaagcaggaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31882497 |
gaaccctttccaaaagacttattaatgcttgcatggaatgctagagttggatattcctttgacaaaaccctaagccatccttttgttgcccaagcaggaa |
31882398 |
T |
|
| Q |
211 |
ttagatcacacttgttcaacaaaagcaccatgtgtttgtgcttgcagt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31882397 |
ttagatcacacttgttcaacaaaagcaccatgtgtttgtgcttgcagt |
31882350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 43154457 - 43154366
Alignment:
| Q |
115 |
cctttccaaaagacttattaatgcttgcatggaatgctagagttggatattcttttgacaaaaccctaagccatcctttagttgcccaagca |
206 |
Q |
| |
|
||||| |||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
43154457 |
cctttacaaaggacttatttatgcttgcatggaatgctagtgttgaatattcttttgacaaaagtctaatatatccttttgttgcccaagca |
43154366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 33479805 - 33479912
Alignment:
| Q |
115 |
cctttccaaaagacttattaatgcttgcatggaatgctagagttggatattcttttgacaaaaccctaagccatcctttagttgcccaagcaggaattag |
214 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
33479805 |
cctttccaaaggacttattaatacttgcatggaatgctagcgttggatattcttttgacaaaactctaagccatccttttgttgcccaagcaggaattag |
33479904 |
T |
|
| Q |
215 |
atcacact |
222 |
Q |
| |
|
||| |||| |
|
|
| T |
33479905 |
atcgcact |
33479912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 33479531 - 33479633
Alignment:
| Q |
15 |
gatgacttcccaacatttggatatccaacaaaaccaacagatattgcttgtttatcgcttttcaatcttgcaaattgtctcaaaaccgatagaagcgaac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
33479531 |
gatgacttcccaacatttggatatccaacgaaaccaacagatattgcttgcttatcacttttcaatcttgcaaattgtctcagaaccgatagaagtgaac |
33479630 |
T |
|
| Q |
115 |
cct |
117 |
Q |
| |
|
||| |
|
|
| T |
33479631 |
cct |
33479633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 33480017 - 33480054
Alignment:
| Q |
221 |
cttgttcaacaaaagcaccatgtgtttgtgcttgcagt |
258 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33480017 |
cttgttcaataaaagcaccatgtgtttgtgcttgcagt |
33480054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University