View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_80 (Length: 272)
Name: NF3376_low_80
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_80 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 32457089 - 32457332
Alignment:
| Q |
10 |
tgagatgaacggagagggttttgtggtcaagtcggaagttgaggttattgagaatggcgccggacattggaacggagaaatgaagctcatacatggccgg |
109 |
Q |
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| T |
32457089 |
tgagaagaacggagagggttttgtggtcaagtcggaagttgaggttattgagaatggcgccggacattggaacggagaaatgaagctcgtacatggccgg |
32457188 |
T |
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| Q |
110 |
agtgttgggggaaaggacggagacgacatcgcctttttggatgccgagggaagaaagtgatgaagcaagttgaagacatcttttgtgggtttgagaccaa |
209 |
Q |
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| T |
32457189 |
agtgttgggggaaaggacggagacgacatcgcctttttggatgccgagggaagaaagtgatgaagcaagttgaagacatcttttgtgggtttgagaccaa |
32457288 |
T |
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| Q |
210 |
gtgaatgaagtgttgttgtatatgatggaaatggagttgccata |
253 |
Q |
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| T |
32457289 |
gtgaatgaggtattgttgtatatgattgaaatggagttgccata |
32457332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 32464040 - 32463803
Alignment:
| Q |
16 |
gaacggagagggttttgtggtcaagtcggaagttgaggttattgagaatggcgccggacattggaacggagaaatgaagctcatacatggccggagtgtt |
115 |
Q |
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| T |
32464040 |
gaacagagaggcttttgtggtcgagtcggaagttgaggttattgagaatggcgccggacattggaacggagaaatgaagctcatacatggccggagtgtt |
32463941 |
T |
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| Q |
116 |
gggggaaaggacggagacgacatcgcctttttggatgccgagggaagaaagtgatgaagcaagttgaagacatcttttgtgggtttgagaccaagtgaat |
215 |
Q |
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| T |
32463940 |
gggggaaaggacggagacgacgtcgcctttttggatgccgagggaagaaagtgatgaagcaagttgaagacatcttttgtgggtttgagaccaagtgaat |
32463841 |
T |
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| Q |
216 |
gaagtgttgttgtatatgatggaaatggagttgccata |
253 |
Q |
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| T |
32463840 |
gaggtattgttgtatatgattgaaatggagttgccata |
32463803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 23461 - 23227
Alignment:
| Q |
19 |
cggagagggttttgtggtcaagtcggaagttgaggttattgagaatggcgccggacattggaacggagaaatgaagctcatacatggccggagtgttggg |
118 |
Q |
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| T |
23461 |
cggagagggttttgtagtcaagtcggaagctgaggttgttgagaatggcgccggacattggaacggagaattgtagctcgtacatggccggagtgttggg |
23362 |
T |
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| Q |
119 |
ggaaaggacggagacgacatcgcctttttggatgccgagggaagaaagtgatgaagcaagttgaagacatcttttgtgggtttgagaccaagtgaatgaa |
218 |
Q |
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| T |
23361 |
agagaggacggagacgacgtcgccttttacgatgccgagggaagaaagtgatgaagcaagttgaagacatcgtttatgggtttgaaaccatgtgaatgaa |
23262 |
T |
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| Q |
219 |
gtgttgttgtatatgatggaaatggagttgccata |
253 |
Q |
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| T |
23261 |
gtgctgttgtatatgattgatatggagttgccata |
23227 |
T |
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