View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_86 (Length: 267)
Name: NF3376_low_86
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_86 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 10602305 - 10602054
Alignment:
| Q |
17 |
tatgaaagtgcattgtgattgatggagtgaataatcaaaattttggcacttagctcgtttaaatgaagnnnnnnnnnn-tcaatgattaaataatttaat |
115 |
Q |
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| T |
10602305 |
tatgaaagtgcattgtggttgatggagtgaataatcaaaattttggcacttagctcatttaaatgaagaaaaaaaaaaatcaatgattaaataatttaat |
10602206 |
T |
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| Q |
116 |
tacattcatgattttttatacatgtacatgtgacatcaattttcttatcctctaatgtgactttctcatttcaaaagaattactaaaactatgcttgaaa |
215 |
Q |
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| T |
10602205 |
tacattcatgattttttatacatgtacatgtgacatcaattttcttatcctctaatgtgtctttctcatttc-aaagaattactaaaactatgcttgaaa |
10602107 |
T |
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| Q |
216 |
tctttaaatgtaaattaatgctcaagtaaga-ttttataggattaattaagtt |
267 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
10602106 |
tctttaaatgtaaattaatgctcaagtaagatttttataggattaattcagtt |
10602054 |
T |
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