View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_low_89 (Length: 256)

Name: NF3376_low_89
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_low_89
NF3376_low_89
[»] chr2 (17 HSPs)
chr2 (18-245)||(9297426-9297653)
chr2 (94-232)||(9286128-9286266)
chr2 (45-169)||(9062252-9062373)
chr2 (44-173)||(9290945-9291072)
chr2 (51-165)||(9315061-9315175)
chr2 (57-150)||(7117095-7117187)
chr2 (94-169)||(9285281-9285356)
chr2 (107-173)||(9076759-9076822)
chr2 (107-173)||(9069162-9069225)
chr2 (186-236)||(9326343-9326393)
chr2 (186-237)||(9285383-9285434)
chr2 (186-236)||(9318487-9318537)
chr2 (45-84)||(9318619-9318658)
chr2 (131-173)||(8574530-8574571)
chr2 (125-167)||(9318566-9318608)
chr2 (37-70)||(9286262-9286295)
chr2 (57-90)||(10334763-10334796)
[»] scaffold0667 (2 HSPs)
scaffold0667 (104-170)||(1565-1632)
scaffold0667 (45-84)||(1638-1677)
[»] chr3 (2 HSPs)
chr3 (186-236)||(37461273-37461323)
chr3 (133-169)||(37461427-37461463)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 9297653 - 9297426
Alignment:
Q  18 ataattacctaaaaatatagtttgagtttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9297653 ataattacctaaaaatatagtttgagtttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttg 9297554  T
Q  118 atgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttatctttgagaaaatatggatatgtaatagtccatattttcctttatgata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9297553 atgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttatctttgagaaaatatggatatgtaatagtccatattttcctttatgata 9297454  T
Q  218 tttgtaattgaaactctctgcggtctgt 245  Q
    ||||||||||||||||||||||||||||    
T  9297453 tttgtaattgaaactctctgcggtctgt 9297426  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 9286266 - 9286128
Alignment:
Q  94 tcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttatctttgagaaaatatggatatgtaa 193  Q
    ||||||||| || | |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||    
T  9286266 tcacattagggtataaagagtttgatgatgaatcctctctccctctggcctttctaaaaggatcttctgctttaatctttgagaaaatatggatctggaa 9286167  T
Q  194 tagtccatattttcctttatgatatttgtaattgaaact 232  Q
    ||||||||||||| | ||||||||||||||| |||||||    
T  9286166 tagtccatattttgccttatgatatttgtaactgaaact 9286128  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 9062252 - 9062373
Alignment:
Q  45 ttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcct 144  Q
    |||||| ||||| ||||||||||||| ||||||   |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  9062252 ttttgagttgtaagtctgagatcacacttatcc---ttgtgtaaaaatctcacattaaggtgtgaagaatttgatgatgaatcctctctccctctggcct 9062348  T
Q  145 ttctaaaaggatcttctgcttttat 169  Q
     |||||||||||| | |||||||||    
T  9062349 atctaaaaggatcatttgcttttat 9062373  T

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Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 9291072 - 9290945
Alignment:
Q  44 tttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcc 143  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || || |||||||||||| ||| |||||||||||||| ||    
T  9291072 tttttgaattgtatgtctgagatcacacttatccctcttgtgtaaaaatctgacattagggtatgtagaatttgatgatgaaccctctctccctctgacc 9290973  T
Q  144 tttctaaaaggatcttctgcttttatcttt 173  Q
    | ||||||||   ||||||||||| |||||    
T  9290972 tatctaaaag--acttctgcttttgtcttt 9290945  T

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Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 9315175 - 9315061
Alignment:
Q  51 attgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcctttctaa 150  Q
    |||||||||||||||||||| ||||||||||| ||||||||| | ||||||| || |  |||||||||||| ||||||||||||||||||||||||||||    
T  9315175 attgtatgtctgagatcacacttatccctcttttgtaaaaatatgacattagggtatttagaatttgatgatgaatcctctctccctctggcctttctaa 9315076  T
Q  151 aaggatcttctgctt 165  Q
    |||||||| ||||||    
T  9315075 aaggatctgctgctt 9315061  T

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Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 7117095 - 7117187
Alignment:
Q  57 tgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcctttctaa 150  Q
    |||| ||||||||| ||||||| | | |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||| |||||    
T  7117095 tgtccgagatcacatttatcccacct-tgtaaaaatctcacattaggatgtgaagaatttgatgatgaatcctctctccctctggcctctctaa 7117187  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 9285281 - 9285356
Alignment:
Q  94 tcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttat 169  Q
    ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||  | |||||||||    
T  9285281 tcacattagtgtgtgaagaatttgattatgaatcctctctccctctggcctttctaaaaggattatttgcttttat 9285356  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 9076759 - 9076822
Alignment:
Q  107 tgaagaatttgatgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttatcttt 173  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9076759 tgaagaatttgatga---atcctctctccctctggcctttctaaaaggatcttctgcctttatcttt 9076822  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 9069162 - 9069225
Alignment:
Q  107 tgaagaatttgatgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttatcttt 173  Q
    |||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  9069162 tgaagaatttgatga---atcctctctccctctggcctttctaaatggatcttctgcttttgtcttt 9069225  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 9326393 - 9326343
Alignment:
Q  186 atatgtaatagtccatattttcctttatgatatttgtaattgaaactctct 236  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  9326393 atatggaatagtccatatttgcctttatgatatttgtaattgaaactctct 9326343  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 9285383 - 9285434
Alignment:
Q  186 atatgtaatagtccatattttcctttatgatatttgtaattgaaactctctg 237  Q
    ||||| |||||||||||||| || ||||||||||||||||||||||||||||    
T  9285383 atatggaatagtccatatttccccttatgatatttgtaattgaaactctctg 9285434  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 9318537 - 9318487
Alignment:
Q  186 atatgtaatagtccatattttcctttatgatatttgtaattgaaactctct 236  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  9318537 atatggaatagtccatatttccctttattatatttgtaattgaaactctct 9318487  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 9318658 - 9318619
Alignment:
Q  45 ttttgaattgtatgtctgagatcacagttatccctcttgt 84  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  9318658 ttttgaattgtatgtctgagatcacatttatccctcttgt 9318619  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 8574530 - 8574571
Alignment:
Q  131 tctccctctggcctttctaaaaggatcttctgcttttatcttt 173  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  8574530 tctccctctggcctttct-aaaggatcttctgcttttgtcttt 8574571  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 9318608 - 9318566
Alignment:
Q  125 atcctctctccctctggcctttctaaaaggatcttctgctttt 167  Q
    |||||||||||||||| ||||||| |||||||| |||||||||    
T  9318608 atcctctctccctctgacctttcttaaaggatcgtctgctttt 9318566  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 9286295 - 9286262
Alignment:
Q  37 gtttgagtttttgaattgtatgtctgagatcaca 70  Q
    ||||||||||||||||||||| ||||||||||||    
T  9286295 gtttgagtttttgaattgtatctctgagatcaca 9286262  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 10334796 - 10334763
Alignment:
Q  57 tgtctgagatcacagttatccctcttgtgtaaaa 90  Q
    ||||| ||||||||||||||||||||||||||||    
T  10334796 tgtctaagatcacagttatccctcttgtgtaaaa 10334763  T

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Target: scaffold0667 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 1632 - 1565
Alignment:
Q  104 gtgtgaagaatttgatgaggaatcctctctccctctggcc-tttctaaaaggatcttctgcttttatc 170  Q
    |||||||||||||||||| |||||||||||| |||||||| |||| ||||||||| ||||||||||||    
T  1632 gtgtgaagaatttgatgatgaatcctctctctctctggccttttcgaaaaggatcgtctgcttttatc 1565  T

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Target: scaffold0667; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 1677 - 1638
Alignment:
Q  45 ttttgaattgtatgtctgagatcacagttatccctcttgt 84  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  1677 ttttgaatagtatgtctgagatcacacttatccctcttgt 1638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 37461323 - 37461273
Alignment:
Q  186 atatgtaatagtccatattttcctttatgatatttgtaattgaaactctct 236  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  37461323 atatggaatagtccatagttccctttatgatatttgtaattgaaactctct 37461273  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 37461463 - 37461427
Alignment:
Q  133 tccctctggcctttctaaaaggatcttctgcttttat 169  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37461463 tccctctggcctttctaaacggatcttctgcttttat 37461427  T

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