View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_low_92 (Length: 250)

Name: NF3376_low_92
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_low_92
NF3376_low_92
[»] chr6 (14 HSPs)
chr6 (1-234)||(1831952-1832185)
chr6 (64-189)||(1827215-1827340)
chr6 (27-200)||(6465141-6465314)
chr6 (58-233)||(6473207-6473382)
chr6 (56-193)||(1845847-1845983)
chr6 (66-233)||(6526219-6526386)
chr6 (56-234)||(1839049-1839229)
chr6 (51-200)||(6457205-6457354)
chr6 (17-199)||(1841986-1842168)
chr6 (173-233)||(13035906-13035966)
chr6 (184-234)||(1827156-1827206)
chr6 (173-234)||(1822309-1822370)
chr6 (58-234)||(6505319-6505495)
chr6 (58-200)||(6516304-6516446)
[»] chr7 (3 HSPs)
chr7 (79-200)||(46383276-46383398)
chr7 (103-231)||(3753994-3754122)
chr7 (103-138)||(9665567-9665602)
[»] chr1 (1 HSPs)
chr1 (77-152)||(35244270-35244345)
[»] chr4 (1 HSPs)
chr4 (103-138)||(13536591-13536626)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 1832185 - 1831952
Alignment:
Q  1 cttacccctacagcctaagagcgtagtttacaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1832185 cttacccctacagcctaagagcgtagtttacaaagctcaaaacatcattgacgtgcgtaatttgagtttgaatttctactcaaggtcataaaatcctcaa 1832086  T
Q  101 tgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgatg 200  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  1832085 tgagtgaataggcttgaggcttatactctctaccccaaattggatcaatctttgcaagcactgcaattccaaagagaaagtatcctaaatgataatgatg 1831986  T
Q  201 gtcgttcttaattccaaacccgaaatcaacacca 234  Q
    |||||| |||||||||||||||||||||||||||    
T  1831985 gtcgttattaattccaaacccgaaatcaacacca 1831952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 1827340 - 1827215
Alignment:
Q  64 gagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttggaagcactg 163  Q
    ||||| |||||||||||| |||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||    
T  1827340 gagttcgaatttctactcgaggtcataaaatcggcaatgagtgaataggcttgaggcttatattttctaccccaaattgaatcaatctttgcaagcactg 1827241  T
Q  164 caattcgtaagagaaagtatcctaaa 189  Q
    |||||||  |||||||||||||||||    
T  1827240 caattcgatagagaaagtatcctaaa 1827215  T

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Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 6465141 - 6465314
Alignment:
Q  27 tttacaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgc 126  Q
    |||| |||| || ||||| ||| |||| |||||||| ||||| | |||||| |||||| ||||||||||  | ||||||||||| ||||||||||||| |    
T  6465141 tttaaaaagatcgaaacaccttagacgggtgtaattcgagttcggatttctgctcaagttcataaaatcagccatgagtgaataagcttgaggcttatac 6465240  T
Q  127 tttctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgatg 200  Q
    || ||||||||||||||||||||||||| |||||| |||||||   ||||||||||||||||||||||||||||    
T  6465241 ttcctaccccaaattggatcaatctttgcaagcacagcaattccatagagaaagtatcctaaatgataatgatg 6465314  T

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Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 6473382 - 6473207
Alignment:
Q  58 taatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttggaa 157  Q
    |||||||| || || ||| | ||||||||||||||||| || ||||||| |||||||||||||||||  ||  ||||||||| |||||||||||| | ||    
T  6473382 taatttgaattcgagtttttgctcaaggtcataaaatcttccatgagtgcataggcttgaggcttatatttcttaccccaaactggatcaatcttagcaa 6473283  T
Q  158 gcactgcaattcgtaagagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacc 233  Q
    ||||||||||||   |||||||||| ||||||||||||||||| || || | |||||| |||||||||||| ||||    
T  6473282 gcactgcaattccatagagaaagtaacctaaatgataatgatgatcattataaattccgaacccgaaatcagcacc 6473207  T

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Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 193
Target Start/End: Complemental strand, 1845983 - 1845847
Alignment:
Q  56 tgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttgg 155  Q
    ||||||| ||||||||||||||||||| ||||||||||||  |||||||| |||||||||||||||||   |||| |||||||||||||||||||||||     
T  1845983 tgtaattagagtttgaatttctactca-ggtcataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgc 1845885  T
Q  156 aagcactgcaa-ttcgtaagagaaagtatcctaaatgat 193  Q
    |||||||| || ||||| |||||||||||| ||||||||    
T  1845884 aagcactgaaatttcgt-agagaaagtatcgtaaatgat 1845847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 233
Target Start/End: Original strand, 6526219 - 6526386
Alignment:
Q  66 gtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttggaagcactgca 165  Q
    |||||||||||| ||||   ||||||||||  | ||||  ||||||||||||| ||||| ||||||||||||||| ||||||||||| | ||||||||||    
T  6526219 gtttgaatttctgctcagattcataaaatcagccatgacagaataggcttgagacttatactttctaccccaaataggatcaatcttagcaagcactgca 6526318  T
Q  166 attcgtaagagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacc 233  Q
    ||||   |||||||||||||||||||||||||||| || || | || ||| ||||| |||||| ||||    
T  6526319 attccatagagaaagtatcctaaatgataatgatgatcattataaactccgaacccaaaatcagcacc 6526386  T

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Target: chr6; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 234
Target Start/End: Complemental strand, 1839229 - 1839049
Alignment:
Q  56 tgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgc----tttctaccccaaattggatcaatct 151  Q
    ||||||| ||||| |||||||||||  ||||||||||||   ||||||||||||||| ||||||||||       ||| |||||||||||||||||||||    
T  1839229 tgtaattagagttcgaatttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatct 1839130  T
Q  152 ttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacca 234  Q
    |||   |||||||||||| | ||||||| |||||||||||||||||||| || |  | ||||||||||||||||||| |||||    
T  1839129 ttgt--gcactgcaattcattagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcacca 1839049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 6457205 - 6457354
Alignment:
Q  51 acgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatc 150  Q
    |||||| |||||||||||||| ||||| |  ||| |||  |||||  | ||||||||||| |||||||| |||| |||||| ||||||  ||||||||||    
T  6457205 acgtgtataatttgagtttgattttcttcctaagttcaggaaatctgccatgagtgaataagcttgaggtttatactttcttccccaagctggatcaatc 6457304  T
Q  151 tttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgatg 200  Q
    |||| ||||||||||||||   ||||||||||||||||||||||||||||    
T  6457305 tttgcaagcactgcaattccatagagaaagtatcctaaatgataatgatg 6457354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 1842168 - 1841986
Alignment:
Q  17 aagagcgtagtttacaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttg 116  Q
    ||||| ||| ||||||||| || ||||| ||| |||  |||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||   ||||    
T  1842168 aagagtgtaatttacaaagatcgaaacaccttagacacgtgtcattagagtttgaatttctactcaaggtcataaaatccttcatgagtgaatccacttg 1842069  T
Q  117 aggcttatgctttctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgat 199  Q
    || || || |||| || ||||||||||||||||||| | | ||| ||||||||   |||||||||| | ||||||||| ||||    
T  1842068 agtctcatactttgtatcccaaattggatcaatcttagcatgcaatgcaattccatagagaaagtaacttaaatgatattgat 1841986  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 13035966 - 13035906
Alignment:
Q  173 agagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacc 233  Q
    |||||||||| |||||||||||||||||||| || | ||||||||||||||||||| ||||    
T  13035966 agagaaagtaacctaaatgataatgatggtcattataaattccaaacccgaaatcagcacc 13035906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 1827206 - 1827156
Alignment:
Q  184 cctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacca 234  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| |||||    
T  1827206 cctaaatgataatgatggtcgttataaattccaaacccgaaatcagcacca 1827156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 1822370 - 1822309
Alignment:
Q  173 agagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacca 234  Q
    ||||||||||| ||||||||||||||||||| || | ||||| |||||| |||||| |||||    
T  1822370 agagaaagtattctaaatgataatgatggtcattataaattcaaaacccaaaatcagcacca 1822309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 234
Target Start/End: Original strand, 6505319 - 6505495
Alignment:
Q  58 taatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttggaa 157  Q
    ||||||||||| || | | | || ||| |||||||||| || |  |||||||||||||||| |||||  || ||||||||  ||||||| ||||||  ||    
T  6505319 taatttgagttcgattctatgcttaagttcataaaatcttccacaagtgaataggcttgagccttatatttcctaccccatgttggatcgatctttacaa 6505418  T
Q  158 gcactgcaatt-cgtaagagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacca 234  Q
    ||||||| ||| ||||| ||||| |||||||| ||| | ||||| || || | |||||| || ||||||||| |||||    
T  6505419 gcactgctattgcgtaa-agaaaatatcctaagtgaaagtgatgatcattgtaaattccgaaaccgaaatcaccacca 6505495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 6516446 - 6516304
Alignment:
Q  58 taatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttggaa 157  Q
    ||||||||||| || |||  ||| ||| ||||||| || || || |||||||||| |||   ||||| ||| ||||||||   ||||||||||||   ||    
T  6516446 taatttgagttcgattttaaacttaagttcataaagtcttccataagtgaataggattgtttcttatacttcctaccccatgctggatcaatcttaacaa 6516347  T
Q  158 gcactgcaattcgtaagagaaagtatcctaaatgataatgatg 200  Q
    ||||||||||||   | ||||| |||||||| |||||||||||    
T  6516346 gcactgcaattccataaagaaaatatcctaattgataatgatg 6516304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 46383276 - 46383398
Alignment:
Q  79 ctcaaggtcataaaatcctcaatgagtgaataggctt-gaggcttatgctttctaccccaaattggatcaatctttggaagcactgcaattcgtaagaga 177  Q
    |||||| |||||| ||| || ||||||||||| |||| ||| ||||| ||| ||||||||||| ||||||||||| |  ||||||| |||||   |||||    
T  46383276 ctcaagttcataatatcttccatgagtgaataagctttgagacttatacttcctaccccaaataggatcaatcttggcgagcactgtaattccatagaga 46383375  T
Q  178 aagtatcctaaatgataatgatg 200  Q
     | ||||||||||||||||||||    
T  46383376 gaatatcctaaatgataatgatg 46383398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 231
Target Start/End: Complemental strand, 3754122 - 3753994
Alignment:
Q  103 agtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgatggt 202  Q
    |||||||| ||||| || |||| ||||   ||||||| |||||||||||||| ||| || |||||||   | ||||| || ||||||||||||||||| |    
T  3754122 agtgaataagcttgtggtttatacttttgtccccaaaatggatcaatctttgcaagaacagcaattccataaagaaaataacctaaatgataatgatgat 3754023  T
Q  203 cgttcttaattccaaacccgaaatcaaca 231  Q
    | || | ||||||||| || |||||||||    
T  3754022 cattataaattccaaaaccaaaatcaaca 3753994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 9665602 - 9665567
Alignment:
Q  103 agtgaataggcttgaggcttatgctttctaccccaa 138  Q
    |||||||||||||||||||||| |||||||||||||    
T  9665602 agtgaataggcttgaggcttatactttctaccccaa 9665567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 35244345 - 35244270
Alignment:
Q  77 tactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctt 152  Q
    |||||||| |||||||||| |  |||||||||||||||||||  |||| ||| ||||||||| |||||||||||||    
T  35244345 tactcaagttcataaaatctttcatgagtgaataggcttgagatttatacttcctaccccaagttggatcaatctt 35244270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 13536626 - 13536591
Alignment:
Q  103 agtgaataggcttgaggcttatgctttctaccccaa 138  Q
    |||||||||||||||||||||| |||||||||||||    
T  13536626 agtgaataggcttgaggcttatactttctaccccaa 13536591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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