View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_94 (Length: 249)
Name: NF3376_low_94
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_94 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 46072676 - 46072453
Alignment:
| Q |
1 |
gtcagtaaggagcctgaagtgtgtgaagatagaagaaggccacggcagaaaagaacacaggaggaaaaagagaacaacagacgctgattaatatccgttt |
100 |
Q |
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| T |
46072676 |
gtcagtaaggagcctgaagtgtgtgaagatagaagaaggccacggcagaaaagaacacaggaggaaaaagagaacaacagacgctgattaatatccgttt |
46072577 |
T |
|
| Q |
101 |
gttacccttttcggctacatttgtatatataccaaaaaagccacaaggagttagtgtaatgtttagaaaattgatcttcctttgcctgcagcagataaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46072576 |
gttacccttttcggctacatttgtatatataccaaaaaggccacaaggagttagtgtaatgtttagaaaattgatcttcctttgcctgcagcagataaac |
46072477 |
T |
|
| Q |
201 |
aaggacatagatgaattgcattga |
224 |
Q |
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| |||||||||||||||||||||| |
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| T |
46072476 |
agggacatagatgaattgcattga |
46072453 |
T |
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