View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3376_low_95 (Length: 248)
Name: NF3376_low_95
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_95 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 6134304 - 6134543
Alignment:
| Q |
1 |
aagaagtttgaggaggagtttggacaaagtgtgaatggtatgaggttttataaaagcttgtatgctcgttaccgcgcaacaaagaagaattcagatcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6134304 |
aagaagtttgaggaggagtttggacaaagtgtgaatggtatgaggttttataagagcttgtatgctcgttaccgcgcaacaaagaagaattcagatcaat |
6134403 |
T |
|
| Q |
101 |
cgttttcttttcgaattcctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttgaatgaataattcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6134404 |
cgttttcttttcgaattcctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttgaatgaataatccg |
6134503 |
T |
|
| Q |
201 |
atgattccaagtgttgggaaagaatccttgttaacctttg |
240 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6134504 |
atgattccaagtgttgggaatgaatccttgttaacctttg |
6134543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 20600490 - 20600726
Alignment:
| Q |
4 |
aagtttgaggaggagtttggacaaagtgtgaatggtatgaggttttataaaagcttgtatgctcgttaccgcgcaacaaagaagaattcagatcaatcgt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||||||||| ||||||| |
|
|
| T |
20600490 |
aagtttgaggaggagtttggacaaagtgtgaatggtatgaggttttataagagcttgtatgctcaataccgggaaacaaagaagaattcagagcaatcgt |
20600589 |
T |
|
| Q |
104 |
tttcttttcgaattcctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttgaatgaataattcgatg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || || |
|
|
| T |
20600590 |
tttcttttcgaattcctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttaaaagaataatccggtg |
20600689 |
T |
|
| Q |
204 |
attccaagtgttgggaaagaatccttgttaacctttg |
240 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
20600690 |
attccaagtgttaggaatgaatccttgttaacctttg |
20600726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 47944400 - 47944312
Alignment:
| Q |
1 |
aagaagtttgaggaggagtttggacaaagtgtgaatggtatgaggttttataaaagcttgtatgctcgttaccgcgcaacaaagaagaa |
89 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||| ||||| ||| | ||||| ||||| || || |||||||||||||| |
|
|
| T |
47944400 |
aagaagttcgaggaggagtttggacaaagggtgaatggtatgaagttttttaagaacttgtttgctcagtatcgggcaacaaagaagaa |
47944312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University