View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3377_high_1 (Length: 382)
Name: NF3377_high_1
Description: NF3377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3377_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 7497555 - 7497219
Alignment:
| Q |
17 |
acatgagtaggtgtctagcctaagaatagtgatcttaggcttttaaggactagtccttaataatatctcactacactatatatgctgaaatatttaacaa |
116 |
Q |
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| T |
7497555 |
acatgagtaggtgtctagcctaagaatagtgatctcaggcttt-aaggactagtccttaataatatctcactacactatatatgctc------------- |
7497470 |
T |
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| Q |
117 |
gtgaagaaataacaaagtattatactaaacttccttagttaaaataattttataaattccaatgatacctgtatgaacataaaagaccatagctgcatgt |
216 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7497469 |
-tgaa-aaataacaaagtattatactaaacttccttagttaaaataattttataaattccaatgatacctgtatgaacataaaagagcatagctgcatgt |
7497372 |
T |
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| Q |
217 |
agaagcacaggaagaaacacagagttaggttccaatgtaaagaactctatatgatagtgttgtgcgttatgtccatctttgacatcagtggcagagatct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7497371 |
agaagcacaggaagaaacacagagttaggttccaatgtaaagaactcaatatgatagtgttgtgtgttatgtccatctttgacatcagtggcagagatct |
7497272 |
T |
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| Q |
317 |
ctccatattcagtctcaaacaatgtcttcctttgacccctttccaccacaggt |
369 |
Q |
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| T |
7497271 |
ctccatattcagtctcaaacaatgtcttcctttgacccctttccaccacaggt |
7497219 |
T |
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