View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3377_high_6 (Length: 251)

Name: NF3377_high_6
Description: NF3377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3377_high_6
NF3377_high_6
[»] chr8 (3 HSPs)
chr8 (135-231)||(2465892-2465988)
chr8 (175-229)||(4093036-4093090)
chr8 (163-229)||(13707245-13707311)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 2465892 - 2465988
Alignment:
Q  135 ctaagaatgttaataacttcctcacttatcaattcatcatatgcatgcttataagatttttcactcccaaatcccaaaaccatatatatcatcttaa 231  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2465892 ctaagaatgttaataacttcctcacttatcaattcttcatatgcatgcttataagatttttcactcccaaatcccaaaaccatatatatcatcttaa 2465988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 4093036 - 4093090
Alignment:
Q  175 atgcatgcttataagatttttcactcccaaatcccaaaaccatatatatcatctt 229  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4093036 atgcatgcttataagatttttcactcccatatcccaaaaccatatatatcatctt 4093090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 13707245 - 13707311
Alignment:
Q  163 tcaattcatcatatgcatgcttataagatttttcactcccaaatcccaaaaccatatatatcatctt 229  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||| |||||||||    
T  13707245 tcaattcatcatatgcatgctcataagatttttcattccaaaatcccaacaccatatctatcatctt 13707311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University