View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3377_high_8 (Length: 249)
Name: NF3377_high_8
Description: NF3377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3377_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 14122191 - 14122094
Alignment:
| Q |
150 |
ggtaacaatgcagtctaaaacaaggggcatgaagccaaacatgttgctacaatattcatggtatcacccaattagcacaatgcaacctttgattctgc |
247 |
Q |
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| T |
14122191 |
ggtaacaatgcagtccaaaacaaggggcatgaagccaaacatgttgctacaatattcatggtatcacccaattagcacaatgcaacctttgaatctgc |
14122094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 14123250 - 14123209
Alignment:
| Q |
111 |
acttaatgcgtccttttatttagaataaatcaatcaaatggt |
152 |
Q |
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| T |
14123250 |
acttaatgcgcacttttatttagaataaatcgatcaaatggt |
14123209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 33650326 - 33650361
Alignment:
| Q |
23 |
taaaaataaatttggtaaactcgaaacaaacatcat |
58 |
Q |
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| T |
33650326 |
taaaaataaatttggtaaacttgaaacaaacatcat |
33650361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 21925833 - 21925865
Alignment:
| Q |
23 |
taaaaataaatttggtaaactcgaaacaaacat |
55 |
Q |
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| T |
21925833 |
taaaaataaatttggtaaacttgaaacaaacat |
21925865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 28124748 - 28124780
Alignment:
| Q |
23 |
taaaaataaatttggtaaactcgaaacaaacat |
55 |
Q |
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| T |
28124748 |
taaaaataaatttggtaaacttgaaacaaacat |
28124780 |
T |
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