View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3377_low_4 (Length: 275)
Name: NF3377_low_4
Description: NF3377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3377_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 26375064 - 26374821
Alignment:
| Q |
16 |
acaaaccacctgatgcacccactgccagccgaaaagagtaagagtgtaaaggagatccccataaaagccgtacaaacattatcatcaataacttgtaatt |
115 |
Q |
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| T |
26375064 |
acaaaccacctgacgcatccactgccggccgaaaagagtaagagtgtaaaggagatccccataaaagccgtacaaacattatcatcaataacttgtaatt |
26374965 |
T |
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| Q |
116 |
tagtctcttggagacaaacaatagacggatattacaaagactaaaatagggattaacccttgatt--ttttgatgnnnnnnnnnngttgatagattttga |
213 |
Q |
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| T |
26374964 |
tagtctcttggagacaaacaatagacagatattacaaagactaaaatagggattaacccttgattttttttgaag-agtttttttgttgatagattttga |
26374866 |
T |
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| Q |
214 |
attaagtattatcagatcagatgagaattcccaataacacacatt |
258 |
Q |
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| T |
26374865 |
attaagtattatcatatcagatgagaattcccaataacacacatt |
26374821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 19611473 - 19611352
Alignment:
| Q |
15 |
aacaaaccacctgatgcacccactgccagccgaaaagagtaagagtgtaaaggagatccccataaaagccgtacaaacattatcatcaataacttgtaat |
114 |
Q |
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|||||||||||||| |||||||||| | | |||||||||||||| ||||| || || |||||| ||||||| ||||| | ||||||| |||||||||||| |
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| T |
19611473 |
aacaaaccacctgacgcacccactgtccgacgaaaagagtaagattgtaatggtgaaccccat-aaagccgcacaaatactatcatctataacttgtaat |
19611375 |
T |
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| Q |
115 |
ttagtctcttggagacaaacaat |
137 |
Q |
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| T |
19611374 |
ttagtttcttgcagacagacaat |
19611352 |
T |
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