View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3377_low_6 (Length: 259)

Name: NF3377_low_6
Description: NF3377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3377_low_6
NF3377_low_6
[»] chr4 (8 HSPs)
chr4 (1-245)||(52189225-52189469)
chr4 (1-89)||(52190303-52190391)
chr4 (1-89)||(30829966-30830054)
chr4 (103-219)||(31410362-31410481)
chr4 (1-89)||(31409352-31409437)
chr4 (1-87)||(8480884-8480970)
chr4 (1-104)||(31410531-31410632)
chr4 (34-88)||(53226752-53226806)
[»] chr8 (5 HSPs)
chr8 (1-245)||(17863505-17863748)
chr8 (1-89)||(17864649-17864737)
chr8 (12-90)||(32565567-32565645)
chr8 (1-85)||(3870807-3870891)
chr8 (1-85)||(3872224-3872308)
[»] chr1 (6 HSPs)
chr1 (1-219)||(35062603-35062833)
chr1 (1-90)||(36574001-36574090)
chr1 (1-89)||(35063556-35063644)
chr1 (1-90)||(26529547-26529636)
chr1 (146-219)||(26280890-26280963)
chr1 (8-90)||(49917434-49917516)
[»] chr5 (5 HSPs)
chr5 (1-219)||(35967387-35967617)
chr5 (1-89)||(38921494-38921582)
chr5 (1-90)||(16727851-16727940)
chr5 (1-89)||(35968630-35968718)
chr5 (14-89)||(16306747-16306822)
[»] chr7 (4 HSPs)
chr7 (12-219)||(41740820-41741037)
chr7 (1-89)||(41739661-41739749)
chr7 (9-102)||(42537763-42537855)
chr7 (35-88)||(25272077-25272130)
[»] chr3 (7 HSPs)
chr3 (103-219)||(19810518-19810638)
chr3 (34-89)||(36163455-36163510)
chr3 (8-86)||(20997679-20997757)
chr3 (8-88)||(9099606-9099686)
chr3 (34-90)||(20884298-20884354)
chr3 (9-102)||(37464910-37465002)
chr3 (1-85)||(11137951-11138035)
[»] chr2 (4 HSPs)
chr2 (1-90)||(36669088-36669177)
chr2 (12-89)||(4753578-4753655)
chr2 (1-90)||(31622038-31622127)
chr2 (12-87)||(40894807-40894882)
[»] chr6 (4 HSPs)
chr6 (34-89)||(18191818-18191873)
chr6 (34-89)||(30758806-30758861)
chr6 (35-89)||(21396367-21396421)
chr6 (34-85)||(31855723-31855774)
[»] scaffold0115 (2 HSPs)
scaffold0115 (1-85)||(4375-4459)
scaffold0115 (1-85)||(12115-12199)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 52189225 - 52189469
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52189225 tatcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtg 52189324  T
Q  101 tgattggagagggacctgaatgaatgtaatccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52189325 tgattggagagggacctgaatgaatgtaatccctccatcttctgaaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaaca 52189424  T
Q  201 ttccaaaagacaaaaataagttatttaaaatcattatctctgctc 245  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  52189425 ttccaaaagacaaaaataagttctttacaatcattatctctgctc 52189469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 52190391 - 52190303
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    ||||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||    
T  52190391 tatcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgttagtcaaatgcatccaaaacgttaacttg 52190303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30829966 - 30830054
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    |||||| ||||||||| ||||||| |||| ||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  30829966 tatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttg 30830054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 31410481 - 31410362
Alignment:
Q  103 attggagagggacctgaatgaatgtaat---ccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaac 199  Q
    |||||||||||||  ||||||| |||||   || ||||||||||| | ||||||  |||| ||||| |||||||||| |||||||||||| |||||||||    
T  31410481 attggagagggacgagaatgaacgtaatatcccttccatcttctgtagaaaatttgcaagctcataacttcatcttctttcataccctccctctcaaaac 31410382  T
Q  200 attccaaaagacaaaaataa 219  Q
    ||||||| ||||||||||||    
T  31410381 attccaagagacaaaaataa 31410362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31409352 - 31409437
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    ||||| |||| ||| |||||||| ||||| |||||||||||||| ||   | |||||||||||||||||||||||||||||||||||||    
T  31409352 tatcaaccacgtccttggatcaaataaacgaaccaaaaactccctca---tctgttccgttagtcaaatgcatccaaaacgttaacttg 31409437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8480970 - 8480884
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaact 87  Q
    |||||| ||| ||||||||||||| ||||  ||||||||||||||||| || | ||||||||||||    |||||||||||||||||    
T  8480970 tatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagtcattcccatccaaaacgttaact 8480884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31410632 - 31410531
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtg 100  Q
    |||||| ||| | |||| ||||||||||| || |||||||||| | ||| | |||||||||||||| |  | |||||||||||||| |||||||||||||    
T  31410632 tatcagacacgttcctgaatcaattaaacgaatcaaaaactcctc-aatatctgttccgttagtcacacacgtccaaaacgttaac-tgaacgttaagtg 31410535  T
Q  101 tgat 104  Q
    ||||    
T  31410534 tgat 31410531  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 53226752 - 53226806
Alignment:
Q  34 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaactt 88  Q
    |||||||||| |||||||||||||   ||||||||||||||  ||||||||||||    
T  53226752 caaaaactcctccaatgtatgttctaatagtcaaatgcatctgaaacgttaactt 53226806  T

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Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 17863505 - 17863748
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtg 100  Q
    |||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  17863505 tatcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttccgtcagtcaaatgcatccaaaacgttaact-gaacgttaagtg 17863603  T
Q  101 tgattggagagggacctgaatgaatgtaatccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  17863604 tgattggagagggacctgaatgaatgtaatccctccatcttctagaaaaaattaacaagttcatatttttatcttccttcataccctccatctcaaaaca 17863703  T
Q  201 ttccaaaagacaaaaataagttatttaaaatcattatctctgctc 245  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  17863704 ttccaaaagacaaaaataagttctttacaatcattatctctgctc 17863748  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 17864737 - 17864649
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    ||||||||||||||| ||||||| ||||| |||||| ||||||| |||||| | ||  |||||||||||||||||||||| ||||||||    
T  17864737 tatcagccacatccccggatcaaataaacgaaccaagaactccctcaatgtctattttgttagtcaaatgcatccaaaacattaacttg 17864649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 32565645 - 32565567
Alignment:
Q  12 tccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 90  Q
    ||||| |||||||| ||  || ||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  32565645 tccctcgatcaatttaatgaatcaaaaactcccccaatgtacgttatgttagtcaaatgcatccaaaacgttaacttga 32565567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 3870807 - 3870891
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaa 85  Q
    |||||||||| ||||| |||||||||| | || ||||||||||||||||   ||||||||||||||| | | |||||||||||||    
T  3870807 tatcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccgttagtcaatttcgtccaaaacgttaa 3870891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 3872308 - 3872224
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaa 85  Q
    |||||||||| |||||| ||||||||||| |||||||||||| | |||||  | ||||||||||||| | | |||||||||||||    
T  3872308 tatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgttagtcaatttcgtccaaaacgttaa 3872224  T

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Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35062603 - 35062833
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtg 100  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||    | |||||||| |||| ||||||||||||||    
T  35062603 tatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagtcatccacgtccaaaacattaa-ttgaacgttaagtg 35062701  T
Q  101 tgat-----------tggagagggacctgaatgaatgtaat--ccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccct 187  Q
    ||||           ||||||||||| ||||||||||||||  ||||| || ||||||||||||||||||||||||||| |||||||||||  |||||||    
T  35062702 tgatgatgtgttcattggagagggacgtgaatgaatgtaatatccctcaattttctggaaaaaattaacaagttcatatattcatcttcctcaataccct 35062801  T
Q  188 ccatctcaaaacattccaaaagacaaaaataa 219  Q
    ||||||||||||||||||||||||||||||||    
T  35062802 ccatctcaaaacattccaaaagacaaaaataa 35062833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 36574001 - 36574090
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 90  Q
    ||||| |||| |||||| |||||  |||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  36574001 tatcaaccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgttagtcaaatgcatccaaaacgttaacttga 36574090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35063644 - 35063556
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    |||||| |||||| || ||||||| |||| |||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||    
T  35063644 tatcaggcacatctctagatcaatgaaacgaaccaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttg 35063556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 26529547 - 26529636
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 90  Q
    |||||| ||| |||||| |||||  |||| ||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  26529547 tatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgttagtcaaatgcatccaaaacgttaacttga 26529636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 26280963 - 26280890
Alignment:
Q  146 aaaaaattaacaagttcatatcttcatcttccttcataccct-ccatctcaaaacattccaaaagacaaaaataa 219  Q
    |||||||||||||| |||||||||||| ||||| |||||||| ||  ||||||||||| ||| ||||||||||||    
T  26280963 aaaaaattaacaagctcatatcttcatattcctccataccctcccccctcaaaacatt-caagagacaaaaataa 26280890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 49917434 - 49917516
Alignment:
Q  8 cacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 90  Q
    ||||||| |||||||||| ||  ||| ||||||||||  | ||| || || ||||||||||||||||||||| ||||||||||    
T  49917434 cacatccttggatcaatttaatgaactaaaaactcccgtattgtttgatctgttagtcaaatgcatccaaaatgttaacttga 49917516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35967387 - 35967617
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtg 100  Q
    ||||||||||||||  | ||||||||||| ||||||||||||||||||||| |||||||||||||||   | |||||||| |||||  |  | |||||||    
T  35967387 tatcagccacatcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagtcaaccacgtccaaaacattaacgggccc-ttaagtg 35967485  T
Q  101 tgat-----------tggagagggacctgaatgaatgtaat--ccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccct 187  Q
    ||||           |||||||||   ||||||||||||||  ||||| || ||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  35967486 tgatgatgtgtcaattggagaggggtgtgaatgaatgtaatatccctcaattttcgggaaaaaattaacaagttcatatattcatcttcattcataccct 35967585  T
Q  188 ccatctcaaaacattccaaaagacaaaaataa 219  Q
    ||||||||||||||||||||||||||||||||    
T  35967586 ccatctcaaaacattccaaaagacaaaaataa 35967617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 38921494 - 38921582
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    |||||| ||||||||| ||||||| |||  ||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  38921494 tatcaggcacatccctagatcaatgaaatgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttg 38921582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 16727851 - 16727940
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 90  Q
    |||||||||| | |||| |||||  |||| ||| ||||||| || |||||| |||||||||||||||||||||||||||| |||||||||    
T  16727851 tatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgttagtcaaatgcatccaaaacattaacttga 16727940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35968718 - 35968630
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    |||||| ||||| | | ||||||| |||| |||||||||||||||||||   ||||  |||||||||||||||||||||||||||||||    
T  35968718 tatcaggcacattcatagatcaatgaaacgaaccaaaaactcccccaattattgttttgttagtcaaatgcatccaaaacgttaacttg 35968630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 16306822 - 16306747
Alignment:
Q  14 cctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    |||||||||||| ||  || |||||||| ||  ||||||||||  |||||||||||||||| ||||||||||||||    
T  16306822 cctggatcaatttaatgaatcaaaaacttccttaatgtatgttatgttagtcaaatgcatctaaaacgttaacttg 16306747  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 41741037 - 41740820
Alignment:
Q  12 tccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtgat------- 104  Q
    |||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||    | ||||||||||||||| |  |||||||||||||           
T  41741037 tccccggatcaattaaactaaccaaaaactcccccaatatttgttccgttagtcatccacgtccaaaacgttaactggc-cgttaagtgtgatgatgtgt 41740939  T
Q  105 ----tggagagggacctgaatgaatgtaat--ccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaa 198  Q
        || |||||||  ||||||||||||||  ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41740938 caattgaagagggatgtgaatgaatgtaatatccctcaattttctggaaaaaattaacaagttcatatattcatcttccttcataccctccatctcaaaa 41740839  T
Q  199 cattccaaaagacaaaaataa 219  Q
    ||||||  |||||||||||||    
T  41740838 cattcc--aagacaaaaataa 41740820  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41739661 - 41739749
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    |||||| ||||||||| ||||||| |||| ||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  41739661 tatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttg 41739749  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 42537763 - 42537855
Alignment:
Q  9 acatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtg 102  Q
    ||||||||| |||||| |||| ||||||||||||||| ||||| | ||||||| ||||    | ||||||||||||| ||||||||||| ||||    
T  42537763 acatccctgaatcaatgaaacgaaccaaaaactccccgaatgtctcttccgtttgtcattcacgtccaaaacgttaa-ttgaacgttaattgtg 42537855  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 25272130 - 25272077
Alignment:
Q  35 aaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaactt 88  Q
    ||||| |||| ||||||||||   ||||||||||||||| ||||||||||||||    
T  25272130 aaaaattccctcaatgtatgtaaagttagtcaaatgcattcaaaacgttaactt 25272077  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 19810638 - 19810518
Alignment:
Q  103 attggagagggacctgaatgaatgtaat---ccctccatcttctggaaaaaa-ttaacaagttcatatcttcatcttccttcataccctccatctcaaaa 198  Q
    ||||||||||||   |||||||||||||   || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  19810638 attggagagggataagaatgaatgtaatatcccttccatcttctggaaaaaaattaacaagttcatatcttcatcttccttcataccctccctctcaaaa 19810539  T
Q  199 cattccaaaagacaaaaataa 219  Q
    |||||||| ||||||||||||    
T  19810538 cattccaagagacaaaaataa 19810518  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 36163455 - 36163510
Alignment:
Q  34 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||    
T  36163455 caaaaactcccccaatgtacgttatgttagtcaaatgcatccaaaacgttaacttg 36163510  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 20997679 - 20997757
Alignment:
Q  8 cacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaac 86  Q
    |||||||| |||||||| ||||||||||||||||||  ||||||  ||| ||||||||||||   ||||||||||||||    
T  20997679 cacatcccaggatcaataaaacaaaccaaaaactccttcaatgttggtttcgttagtcaaataagtccaaaacgttaac 20997757  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 9099606 - 9099686
Alignment:
Q  8 cacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaactt 88  Q
    |||||||||| |||||| |||| ||||||||||||   ||||||  ||||||||||||||||   ||||||||||||||||    
T  9099606 cacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttccgttagtcaaataagtccaaaacgttaactt 9099686  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 20884298 - 20884354
Alignment:
Q  34 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 90  Q
    |||||||||| |||||  ||||||  |||||||||||||||||||||||||||||||    
T  20884298 caaaaactcctccaatacatgttctcttagtcaaatgcatccaaaacgttaacttga 20884354  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 37465002 - 37464910
Alignment:
Q  9 acatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtg 102  Q
    |||||||| ||||||| |||||||||||||||||||  ||||| | ||||||| ||||    | |||||||||||||| |||||||||| ||||    
T  37465002 acatccctagatcaatgaaacaaaccaaaaactccctgaatgtctcttccgtttgtcattcacgtccaaaacgttaac-tgaacgttaattgtg 37464910  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 11137951 - 11138035
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaa 85  Q
    |||||| |||||||||||||||   |||| |||||||||||||| |||||| |||| | ||||| | |  | |||||||||||||    
T  11137951 tatcagacacatccctggatcatgaaaacgaaccaaaaactccctcaatgtctgtttctttagttatacacgtccaaaacgttaa 11138035  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 36669177 - 36669088
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 90  Q
    |||||||||| |||||| |||||  |||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  36669177 tatcagccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtctgttctgttagtcaaatgcatccaaaacgttaacttga 36669088  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 4753578 - 4753655
Alignment:
Q  12 tccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    |||||||||||||||||  || ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  4753578 tccctggatcaattaaatgaatcaaaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacgttaacttg 4753655  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31622127 - 31622038
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 90  Q
    ||||| |||| |||||| |||||  |||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||    
T  31622127 tatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtttgtcaaatgcatccaaaacgttaacttga 31622038  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 40894882 - 40894807
Alignment:
Q  12 tccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaact 87  Q
    ||||||||||||| |||| ||| ||||||||||||||||| | ||||||||||||    | |||||||||||||||    
T  40894882 tccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcattcacgtccaaaacgttaact 40894807  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 18191818 - 18191873
Alignment:
Q  34 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  18191818 caaaaactcccccaatgtatgttatgttagtcaaatgcatccaaaacgttaacttg 18191873  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 30758861 - 30758806
Alignment:
Q  34 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||| ||||||||    
T  30758861 caaaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacattaacttg 30758806  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 21396367 - 21396421
Alignment:
Q  35 aaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 89  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||||| |||||||    
T  21396367 aaaaactcctccaatgtatgttcttttagtcaaatacatccaaaacgctaacttg 21396421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 31855723 - 31855774
Alignment:
Q  34 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaa 85  Q
    |||||||||||| ||||||||||  |||||||||||| ||||||||| ||||    
T  31855723 caaaaactcccctaatgtatgttatgttagtcaaatgtatccaaaacattaa 31855774  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 4375 - 4459
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaa 85  Q
    |||||||||| ||||| ||||||| ||||  ||||||||||||||||| || | |||| |||||||    |||||||||||||||    
T  4375 tatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccattagtcattcccatccaaaacgttaa 4459  T

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Target: scaffold0115; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 12115 - 12199
Alignment:
Q  1 tatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaa 85  Q
    |||||||||| ||||| ||||||| ||||  ||||||||||||||||| || | |||| |||||||    |||||||||||||||    
T  12115 tatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccattagtcattcccatccaaaacgttaa 12199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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