View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3377_low_7 (Length: 251)

Name: NF3377_low_7
Description: NF3377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3377_low_7
NF3377_low_7
[»] chr8 (3 HSPs)
chr8 (135-231)||(2465892-2465988)
chr8 (175-229)||(4093036-4093090)
chr8 (163-229)||(13707245-13707311)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 2465892 - 2465988
Alignment:
Q  135 ctaagaatgttaataacttcctcacttatcaattcatcatatgcatgcttataagatttttcactcccaaatcccaaaaccatatatatcatcttaa 231  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2465892 ctaagaatgttaataacttcctcacttatcaattcttcatatgcatgcttataagatttttcactcccaaatcccaaaaccatatatatcatcttaa 2465988  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 4093036 - 4093090
Alignment:
Q  175 atgcatgcttataagatttttcactcccaaatcccaaaaccatatatatcatctt 229  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4093036 atgcatgcttataagatttttcactcccatatcccaaaaccatatatatcatctt 4093090  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 13707245 - 13707311
Alignment:
Q  163 tcaattcatcatatgcatgcttataagatttttcactcccaaatcccaaaaccatatatatcatctt 229  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||| |||||||||    
T  13707245 tcaattcatcatatgcatgctcataagatttttcattccaaaatcccaacaccatatctatcatctt 13707311  T

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