View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3377_low_9 (Length: 249)

Name: NF3377_low_9
Description: NF3377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3377_low_9
NF3377_low_9
[»] chr4 (2 HSPs)
chr4 (150-247)||(14122094-14122191)
chr4 (111-152)||(14123209-14123250)
[»] chr3 (3 HSPs)
chr3 (23-58)||(33650326-33650361)
chr3 (23-55)||(21925833-21925865)
chr3 (23-55)||(28124748-28124780)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 14122191 - 14122094
Alignment:
Q  150 ggtaacaatgcagtctaaaacaaggggcatgaagccaaacatgttgctacaatattcatggtatcacccaattagcacaatgcaacctttgattctgc 247  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14122191 ggtaacaatgcagtccaaaacaaggggcatgaagccaaacatgttgctacaatattcatggtatcacccaattagcacaatgcaacctttgaatctgc 14122094  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 14123250 - 14123209
Alignment:
Q  111 acttaatgcgtccttttatttagaataaatcaatcaaatggt 152  Q
    ||||||||||  ||||||||||||||||||| ||||||||||    
T  14123250 acttaatgcgcacttttatttagaataaatcgatcaaatggt 14123209  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 33650326 - 33650361
Alignment:
Q  23 taaaaataaatttggtaaactcgaaacaaacatcat 58  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33650326 taaaaataaatttggtaaacttgaaacaaacatcat 33650361  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 21925833 - 21925865
Alignment:
Q  23 taaaaataaatttggtaaactcgaaacaaacat 55  Q
    ||||||||||||||||||||| |||||||||||    
T  21925833 taaaaataaatttggtaaacttgaaacaaacat 21925865  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 28124748 - 28124780
Alignment:
Q  23 taaaaataaatttggtaaactcgaaacaaacat 55  Q
    ||||||||||||||||||||| |||||||||||    
T  28124748 taaaaataaatttggtaaacttgaaacaaacat 28124780  T

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